PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920404.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 749aa    MW: 83059.2 Da    PI: 5.3709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920404.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-2187142156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++re L+k+lgL+ rqVk+WFqNrR++ k
  XP_010920404.1  87 RKKYHRHTAEQIKEMEALFKESPHPDEKQRELLSKQLGLSARQVKFWFQNRRTQIK 142
                     7999************************************************9877 PP
2START210.75.6e-662594822206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a+ a++el+k+a+  ep+Wv+s+    e++n+de++++f+++ +       s+ea+r+sgvv+ +  +lv+ ++d++ qW+e ++    ka+t+
  XP_010920404.1 259 IANLALDELMKMATTLEPLWVRSVetgrEILNYDEYIREFSPEISskgqvrHSIEASRESGVVFLDISRLVKAFMDVN-QWKELFPgmvsKASTI 352
                     6677899***********************************999999******************************.******99999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vi sg      g++qlm+aelq+l+p+vp R+f+f+Ry++ql+ ++w+i dvSvd  +++  ++s+v+++++pSg++ie+ +ngh+kvtwvehv
  XP_010920404.1 353 DVIYSGkgesgdGTIQLMFAELQMLTPMVPtREFYFIRYCKQLSPEKWAIIDVSVDKIEENI-DQSLVKCRKRPSGCVIEDQANGHCKVTWVEHV 446
                     ************************************************************98.9******************************* PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++  ++ ++rs+  +gla+ga++w+atlq qce+
  XP_010920404.1 447 ECQKCAIPTMYRSIAMNGLAFGARHWMATLQLQCER 482
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-2275138IPR009057Homeodomain-like
SuperFamilySSF466891.84E-2077145IPR009057Homeodomain-like
PROSITE profilePS5007117.8884144IPR001356Homeobox domain
SMARTSM003892.9E-1886148IPR001356Homeobox domain
PfamPF000462.6E-1887142IPR001356Homeobox domain
CDDcd000865.64E-1791142No hitNo description
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PROSITE profilePS5084842.001249485IPR002913START domain
SuperFamilySSF559611.09E-31251482No hitNo description
CDDcd088756.26E-111253481No hitNo description
SMARTSM002341.5E-67258482IPR002913START domain
PfamPF018521.6E-54259482IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-7302454IPR023393START-like domain
SuperFamilySSF559614.67E-12504680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MDAGNTRTKD FFASPALSLS LAGVFRNVEV VEEEVEEGDE GSGGGSRGEP LEISSENTGP  60
GAQSDEDGGD NGLAEEDGEV GKKKKRRKKY HRHTAEQIKE MEALFKESPH PDEKQRELLS  120
KQLGLSARQV KFWFQNRRTQ IKAIQERHEN SLLKSEIDKL RDENRAMRQM INKACCPNCG  180
FATSSKDTTM TTEEQQLRIE IARLKAEIEK LRAMQGKVPA EGTASPSSSF SAGTDQNNRS  240
SLDCYSGFFG LEKSRILEIA NLALDELMKM ATTLEPLWVR SVETGREILN YDEYIREFSP  300
EISSKGQVRH SIEASRESGV VFLDISRLVK AFMDVNQWKE LFPGMVSKAS TIDVIYSGKG  360
ESGDGTIQLM FAELQMLTPM VPTREFYFIR YCKQLSPEKW AIIDVSVDKI EENIDQSLVK  420
CRKRPSGCVI EDQANGHCKV TWVEHVECQK CAIPTMYRSI AMNGLAFGAR HWMATLQLQC  480
ERIVFFMATN VPTKDSNVIP TGVSTPAGRK SILKFSQRMT SSFCLAIGAS RNRTWTKASI  540
RSGEDIRFTS RKNVNDPGEP TGVIVCAVSS TWLPVPSMAL FDYLRDESRR NEWDIMLAGG  600
PTETIANLAK GQDRGNSVLV HATKSADRTS MWVLQDSSTN AYESMIVYAP VDIEEMQSVM  660
TGCDSSNMAI LPSGFSILPD ELETRPLVIT SKPEEKATDG GGSLLTVGVQ VLANTSPLAK  720
LTMESVETAS TLISCTLQNI KKAFQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186KKKKRR
28188KKKKRRKK
38286KKKRR
48287KKKRRK
58288KKKRRKK
68387KKRRK
78388KKRRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920404.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2H3XVD80.0A0A2H3XVD8_PHODC; homeobox-leucine zipper protein GLABRA 2 isoform X1
STRINGXP_008789333.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]