PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920400.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 864aa    MW: 95626.2 Da    PI: 5.5231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920400.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-075483127
                    --S---SGGGG...TS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffar...tGtCkyGdrCkFaHgp 27
                    +kt+lC++++r   +G C++Gd C++aHg+
  XP_010920400.1 54 WKTSLCSYYRRqpgGGGCSHGDACQYAHGE 83
                    8**********66557************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-125089IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-55288IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-45383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6955384IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-55483IPR000571Zinc finger, CCCH-type
SuperFamilySSF549285.43E-8133201IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3307.0E-9133201IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.723133200IPR000504RNA recognition motif domain
CDDcd005903.99E-7133195No hitNo description
PROSITE profilePS5168746.821265854IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.3E-46267293IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.3E-46325456IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.3E-46502618IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.1E-64512618IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.0E-10558622IPR025714Methyltransferase domain
CDDcd024408.01E-8564642No hitNo description
Gene3DG3DSA:3.40.50.1501.1E-64735793IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.3E-46741794IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.8E-6745789IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300749781IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.1E-64828852IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.3E-46837851IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MESESVMDVD ASPTSNEEFQ PSDLVSVEEE AGDGAAEKRK REDKEEGGRR KALWKTSLCS  60
YYRRQPGGGG CSHGDACQYA HGEAELRPRP DNTWDPTSQR AKKLLKSEAL AAEEEDSLPV  120
SIDATSLDKC LIGLPRKWTS DNLKNFLDAQ GILYKMAKKK KGMSVGFVGF ENIEQVKSAI  180
EVLNENSAGG KQIKVADAVR RLHEKKPLVD VSSDQSKEQN TESHLGSDDP TLSTSSTLID  240
DADAVEKDTS VVEGLVSKTR NARDVVTPLA HMPYNDQLEH KKSSLLQILK RLTRNARKAC  300
PDAVPLPEWI NTSREIGGLP CKFEGVLDSP VINGYRNKCE FSVGCSLQGK RTVGFMLGNF  360
REGITAVEEP VNCPNISRIS CKYASIFQDF LQSSVLPVWN RINNTGFWRQ FTVREGRRPG  420
QAAAENLDNQ ITEVMLIVQV CSSGVDEELI KNEFRRMTQV LTQEATACSP LLPLTTIVVQ  480
DHKGISNAAP ADCPLLPLLI PKVEDQSGLE RPYVGEARIH DYISNLRFSI SPTAFFQVNT  540
LAAERLYSLA GDWADLNSDT LLFDICCGTG TIGLTLAHRV GMVVGIEMNE SAVSDAQRNA  600
VINGIENCRF VCGKAEDVMG TLLKQYLDMP QQHANASAKE ILMLPEERTD EKLDTLVAPE  660
QNFDGNTTHE ESCIDHGKDN GHGSLANKGS NNDANDLSGT LKNCTAGCEE TTHENPERIE  720
MIQNNCISES EKGKAEAIRQ FTDVVAIVDP PRVGLHPIVI KSLRTHPRIR RLVYISCNPE  780
SLVANAIELC TPTTDKPEKG KGNRSWRNMS SAGLARYRVK SMPNSEPFRP VRAMAVDLFP  840
HTPHCEMVML FREMIFFFFQ KMIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5xj2_A1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5xj2_B1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5xj2_C1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5xj2_D1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5zq1_A1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5zq8_A1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
5zq8_B1e-18511625257371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920400.10.0zinc finger CCCH domain-containing protein 24 isoform X2
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3Y0W00.0A0A2H3Y0W0_PHODC; zinc finger CCCH domain-containing protein 24
STRINGXP_008791527.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]