PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010920399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 882aa MW: 97558.8 Da PI: 5.0248 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 54 | 83 | 1 | 27 |
--S---SGGGG...TS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffar...tGtCkyGdrCkFaHgp 27 +kt+lC++++r +G C++Gd C++aHg+ XP_010920399.1 54 WKTSLCSYYRRqpgGGGCSHGDACQYAHGE 83 8**********66557************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-12 | 50 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.45E-5 | 52 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-4 | 53 | 83 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 53 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 54 | 83 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50102 | 8.723 | 133 | 200 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 7.3E-9 | 133 | 201 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 5.57E-8 | 133 | 201 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
CDD | cd00590 | 4.09E-7 | 133 | 195 | No hit | No description |
PROSITE profile | PS51687 | 44.165 | 265 | 872 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 4.32E-47 | 267 | 293 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 4.32E-47 | 325 | 596 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 2.2E-64 | 490 | 596 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 5.3E-10 | 536 | 606 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 9.09E-8 | 542 | 617 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 2.2E-64 | 753 | 811 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 4.32E-47 | 759 | 812 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 2.9E-6 | 763 | 807 | IPR010280 | (Uracil-5)-methyltransferase family |
PROSITE pattern | PS01230 | 0 | 767 | 799 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 2.2E-64 | 846 | 870 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 4.32E-47 | 855 | 869 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 882 aa Download sequence Send to blast |
MESESVMDVD ASPTSNEEFQ PSDLVSVEEE AGDGAAEKRK REDKEEGGRR KALWKTSLCS 60 YYRRQPGGGG CSHGDACQYA HGEAELRPRP DNTWDPTSQR AKKLLKSEAL AAEEEDSLPV 120 SIDATSLDKC LIGLPRKWTS DNLKNFLDAQ GILYKMAKKK KGMSVGFVGF ENIEQVKSAI 180 EVLNENSAGG KQIKVADAVR RLHEKKPLVD VSSDQSKEQN TESHLGSDDP TLSTSSTLID 240 DADAVEKDTS VVEGLVSKTR NARDVVTPLA HMPYNDQLEH KKSSLLQILK RLTRNARKAC 300 PDAVPLPEWI NTSREIGGLP CKFEGVLDSP VINGYRNKCE FSVGCSLQGK RTVGFMLGNF 360 REGITAVEEP VNCPNISRIS CKYASIFQDF LQSSVLPVWN RINNTGFWRQ FTVREGRRPG 420 QAAAENLDNQ ITEVMLIVQV CSSGVDEELI KNEFRRMTQV LTQEATACSP LLPLTTIVVQ 480 VEDQSGLERP YVGEARIHDY ISNLRFSISP TAFFQVNTLA AERLYSLAGD WADLNSDTLL 540 FDICCGTGTI GLTLAHRVGM VVGIEMNESA VSDAQRNAVI NGIENCRFVC GKAEDVMGTL 600 LKQYLDMPQQ HGIVSDFLES NGTNQDDNVK NDNSDGLTLQ SDTSTSADDL LANASAKEIL 660 MLPEERTDEK LDTLVAPEQN FDGNTTHEES CIDHGKDNGH GSLANKGSNN DANDLSGTLK 720 NCTAGCEETT HENPERIEMI QNNCISESEK GKAEAIRQFT DVVAIVDPPR VGLHPIVIKS 780 LRTHPRIRRL VYISCNPESL VANAIELCTP TTDKPEKGKG NRSWRNMSSA GLARYRVKSM 840 PNSEPFRPVR AMAVDLFPHT PHCEMVMLFR EMIFFFFQKM IY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 2e-21 | 327 | 642 | 121 | 417 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 2e-21 | 327 | 642 | 120 | 416 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 2e-21 | 327 | 642 | 121 | 417 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920398.1 | 0.0 | zinc finger CCCH domain-containing protein 24 isoform X1 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A2H3Y0W0 | 0.0 | A0A2H3Y0W0_PHODC; zinc finger CCCH domain-containing protein 24 | ||||
STRING | XP_008791527.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|