PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920398.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 904aa    MW: 99824.5 Da    PI: 5.0693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920398.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-075483127
                    --S---SGGGG...TS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffar...tGtCkyGdrCkFaHgp 27
                    +kt+lC++++r   +G C++Gd C++aHg+
  XP_010920398.1 54 WKTSLCSYYRRqpgGGGCSHGDACQYAHGE 83
                    8**********66557************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.1E-125089IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.49E-55288IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-45383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6955384IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-55483IPR000571Zinc finger, CCCH-type
SuperFamilySSF549285.84E-8133201IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.723133200IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3307.5E-9133201IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005904.22E-7133195No hitNo description
PROSITE profilePS5168744.141265894IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.51E-46267293IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-46325456IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-46502618IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.3E-64512618IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138475.5E-10558628IPR025714Methyltransferase domain
CDDcd024409.38E-8564639No hitNo description
Gene3DG3DSA:3.40.50.1502.3E-64775833IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-46781834IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059583.0E-6785829IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300789821IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.3E-64868892IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-46877891IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MESESVMDVD ASPTSNEEFQ PSDLVSVEEE AGDGAAEKRK REDKEEGGRR KALWKTSLCS  60
YYRRQPGGGG CSHGDACQYA HGEAELRPRP DNTWDPTSQR AKKLLKSEAL AAEEEDSLPV  120
SIDATSLDKC LIGLPRKWTS DNLKNFLDAQ GILYKMAKKK KGMSVGFVGF ENIEQVKSAI  180
EVLNENSAGG KQIKVADAVR RLHEKKPLVD VSSDQSKEQN TESHLGSDDP TLSTSSTLID  240
DADAVEKDTS VVEGLVSKTR NARDVVTPLA HMPYNDQLEH KKSSLLQILK RLTRNARKAC  300
PDAVPLPEWI NTSREIGGLP CKFEGVLDSP VINGYRNKCE FSVGCSLQGK RTVGFMLGNF  360
REGITAVEEP VNCPNISRIS CKYASIFQDF LQSSVLPVWN RINNTGFWRQ FTVREGRRPG  420
QAAAENLDNQ ITEVMLIVQV CSSGVDEELI KNEFRRMTQV LTQEATACSP LLPLTTIVVQ  480
DHKGISNAAP ADCPLLPLLI PKVEDQSGLE RPYVGEARIH DYISNLRFSI SPTAFFQVNT  540
LAAERLYSLA GDWADLNSDT LLFDICCGTG TIGLTLAHRV GMVVGIEMNE SAVSDAQRNA  600
VINGIENCRF VCGKAEDVMG TLLKQYLDMP QQHGIVSDFL ESNGTNQDDN VKNDNSDGLT  660
LQSDTSTSAD DLLANASAKE ILMLPEERTD EKLDTLVAPE QNFDGNTTHE ESCIDHGKDN  720
GHGSLANKGS NNDANDLSGT LKNCTAGCEE TTHENPERIE MIQNNCISES EKGKAEAIRQ  780
FTDVVAIVDP PRVGLHPIVI KSLRTHPRIR RLVYISCNPE SLVANAIELC TPTTDKPEKG  840
KGNRSWRNMS SAGLARYRVK SMPNSEPFRP VRAMAVDLFP HTPHCEMVML FREMIFFFFQ  900
KMIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-19511664258417Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-19511664257416Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-19511664258417Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920398.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3Y0W00.0A0A2H3Y0W0_PHODC; zinc finger CCCH domain-containing protein 24
STRINGXP_008791527.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]