PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 439aa MW: 48469.1 Da PI: 4.9611 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.6 | 1.6e-26 | 148 | 213 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++g+++ln +a+ L dv ++RRiYDi+NVLe+++liek+ kn+irwkg XP_010920263.1 148 RYDSSLGLLTKKFISLLQRADDGTLDLNRAAEIL---DV--QKRRIYDITNVLEGVGLIEKTLKNRIRWKG 213 6899******************************...**..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.5E-28 | 144 | 214 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.5E-34 | 148 | 213 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.99E-17 | 148 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 4.8E-24 | 150 | 213 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 9.06E-43 | 224 | 331 | No hit | No description |
SuperFamily | SSF144074 | 1.18E-29 | 225 | 330 | No hit | No description |
Pfam | PF16421 | 5.5E-29 | 230 | 328 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MSGVEGSSLQ PAELRLPSPH QRAPQILRPA AHRHFPFSPA PRPSSPTPGL DPHALPCRSL 60 GPADKDRIAD VKKQTNGTEI DKVESGEGAV GQGQKEETGS LILPTESATG AKRPRKPKPS 120 KQKKTVQQQV LGAAEGNLSN ILNTSSCRYD SSLGLLTKKF ISLLQRADDG TLDLNRAAEI 180 LDVQKRRIYD ITNVLEGVGL IEKTLKNRIR WKGIDMSRPK ELDDQITAFK AEVETLYAED 240 CRLDGMIREM QDNLRILTED ENNQKWLYLT NDDINSLPCF EDSTLIAIRA PHGTSIEVPN 300 PDEGLDFPQR RYQILFRSSM GPIDMYLISN HGEIYEASNQ NQQPAAMDLC AETSSKNDTS 360 FQPADQNTGG TSERGHDQVT QNNSSGSVTS QDCTGAILKI APSDNDMDAD YWFLTDHGAS 420 ITDTWRTEGI LELKPNYPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-23 | 148 | 214 | 7 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920263.1 | 0.0 | transcription factor E2FB isoform X2 | ||||
TrEMBL | A0A3Q0IEC3 | 0.0 | A0A3Q0IEC3_PHODC; transcription factor E2FB-like isoform X1 | ||||
STRING | XP_008807578.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.2 | 3e-94 | E2F transcription factor 1 |