PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920198.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family RAV
Protein Properties Length: 355aa    MW: 39587.6 Da    PI: 6.7931
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920198.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.2e-0862108254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     +ykGV     +g W A+I+       + r++lg+f ++  Aa a++ a+ kl+
  XP_010920198.1  62 RYKGVVLQQ-NGHWGAQIYAH-----HHRIWLGTFKSELAAAVAYDSAAIKLH 108
                     599**9877.8*********4.....5**********99************98 PP
2B384.31.1e-26190281189
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f k+ltpsdv+k++rlv+pkk+a++       +++   +  l ++d+++r W ++++y+k+s++yv+tkGW++Fvk+++L+++D+v F++ + ++
  XP_010920198.1 190 FTKELTPSDVGKLNRLVIPKKHATRSfpkvtpESN--DELLLEFRDPESRLWVFRYCYWKSSQSYVFTKGWNKFVKEKRLQAKDSVAFYHCE-ER 281
                     89*********************999998865434..4557999*********************************************865.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-1462123IPR001471AP2/ERF domain
PROSITE profilePS5103216.01562117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1462117IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1262118IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.9E-32188282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-24189277No hitNo description
SuperFamilySSF1019368.37E-27189289IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-24190282IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012190294IPR003340B3 DNA binding domain
SMARTSM010197.6E-21190292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFQSKDDDVS MVDASSVAEV GNMAGGMLSM ATTAAAAREG EGSTSTGGGD PSIMQRPSSS  60
MRYKGVVLQQ NGHWGAQIYA HHHRIWLGTF KSELAAAVAY DSAAIKLHRG DSHRNLPRNE  120
ITIHEARFQE QFSTDSILEM IKNGSYESRF AEYLQVIQSS LAAPSRVSSR SGFGGGGGGG  180
DGGTICCEMF TKELTPSDVG KLNRLVIPKK HATRSFPKVT PESNDELLLE FRDPESRLWV  240
FRYCYWKSSQ SYVFTKGWNK FVKEKRLQAK DSVAFYHCEE RKSPWRAYCM IKAVPFQQEQ  300
GQENGNVMIG LGLSYKREMD EEEEEEVISE PMALSGVTEG EQEKKRVKIF GVWVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-30189278796B3 domain-containing transcription factor NGA1
5os9_B4e-30189278796B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120157.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2H3YK990.0A0A2H3YK99_PHODC; AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1
STRINGXP_008800116.11e-176(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-76RAV family protein