PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920081.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 799aa    MW: 87649.6 Da    PI: 7.078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920081.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07733787146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      +++WT +E+e l+dav+++  +      W++I +       k+R + ++k++w++
   XP_010920081.1 733 KLAWTVQEEEALKDAVQKFSVNsdgtlPWTKILEFGRrvfhKTRQPGDLKDKWRN 787
                      689******************************9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.97E-11385454IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.556397446IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.101.3E-9398446IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002492.2E-7399444IPR001965Zinc finger, PHD-type
PROSITE patternPS013590400443IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.015728789IPR017877Myb-like domain
SuperFamilySSF466891.79E-8730788IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-7730789IPR009057Homeodomain-like
SMARTSM007170.0081732791IPR001005SANT/Myb domain
CDDcd116604.39E-11736788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MATELLPWHW IVETLAQVEE LDASILETII CRDPDFSKNA PEIVRERVAL RYLEKLVPSS  60
SASGVPSTSA SFRANEPAVD VLKKVAGLCK LEKDKDKLHA PDLHQFILQK KASLPKSSLQ  120
LQLSSTLEGH SQLLSSLKEP SGLCIHSRAD CLRCSIDDDN QRAKKLRLSR KDAEIQSPKQ  180
RSPVTAHDGG TVTLQEDYPG SAQHVNKRNV SDGERINFSS GEIEPLIQTL AASAPDGGKF  240
NLKQDSSRLG KGGEIQPLRQ TSAAPPSDRN DVNLQKDSSG LGQHLPKQNM PDAGSSHLHQ  300
DIGSTGGDTI QLLKDYSSLQ NASSDRSTKN VNPASGKTDL FSGVPSVMPE ASSDSDGACD  360
VPSDFNLCDV FDNEKHRLLT SQSLANHDSV TGDWTEQGLC IKCDNGGQLL SCSASGCSIG  420
VHESCLGPFV KVEKTGLFYC PFCSFRRAAI AYCKAREKLS SAKNALSAFL GKDPIPGHRK  480
EQSSPKVHRE TSQADVAGNL SHQSAVPHAD KLNVSFSTAQ EEHQQLEVAK VCDKAKLCSK  540
QMDNPSGVEG CDVSHNPVEN KHDKMFKKVS FPDSEDADTI INVENELGNN SEHVWVAEHQ  600
QPTEPQEGID NGNLPCEDRD TSTGVHAHDV SKAKQNSNID SADDHLQTQH LKNQGQVEAF  660
LDHDTGHKSP SPQTSEKHRE SRRQHAAVGE ACHTQGTVGD QSWNKVSPGK NLKYRSRPKR  720
YSNPIIPSGR RKKLAWTVQE EEALKDAVQK FSVNSDGTLP WTKILEFGRR VFHKTRQPGD  780
LKDKWRNIQI KEGLRTRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920081.10.0uncharacterized protein LOC105044011 isoform X1
TrEMBLA0A2H3WXL00.0A0A2H3WXL0_PHODC; uncharacterized protein LOC103695626
STRINGXP_008775217.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP273533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-06MYB_related family protein