PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27149.6 Da PI: 8.7957 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.8e-17 | 118 | 169 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++keq Lee F+++ +++ +++ +A++l+L rqV vWFqNrRa+ k XP_010920063.1 118 LRLSKEQSSYLEERFKEHTTLNPKQKLAIARRLNLRPRQVEVWFQNRRARTK 169 5789**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.1e-38 | 116 | 202 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk+rlskeq++ LEe F+e+++L+p++K ++ar+L+l+prqv+vWFqnrRARtk+kq+E+dye+Lk++ + l+een+rL+ke +eL+ XP_010920063.1 116 KKLRLSKEQSSYLEERFKEHTTLNPKQKLAIARRLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKQWREYLTEENRRLHKEIQELK 202 9*************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 91 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-17 | 105 | 172 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.034 | 111 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-13 | 113 | 175 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.3E-15 | 118 | 169 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.84E-12 | 119 | 172 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 146 | 169 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.6E-8 | 171 | 203 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 8.8E-17 | 171 | 214 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEVASSACNG DCSSSKQSRA SRQEPNLMDK DGGALMIHPS LQLELKISWL AETDLEGNID 60 EAKSRRGLNV KEATRDADDT CDDMKPSSST SHSMTAERGF EQCRNGGKGE GGKGGKKLRL 120 SKEQSSYLEE RFKEHTTLNP KQKLAIARRL NLRPRQVEVW FQNRRARTKL KQTEVDYEYL 180 KQWREYLTEE NRRLHKEIQE LKSFESPIQN VYHFMQPTML TICPSCQHAI GLQKNW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 171 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920063.1 | 1e-178 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | A2Z1U1 | 1e-49 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 8e-49 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A2H3XUR0 | 1e-138 | A0A2H3XUR0_PHODC; homeobox-leucine zipper protein ATHB-4-like isoform X1 | ||||
STRING | XP_008788847.1 | 1e-139 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-46 | homeobox from Arabidopsis thaliana |