PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 15052.7 Da PI: 6.9974 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.9 | 7.9e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V XP_010919877.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP | |||||||
2 | zf-LSD1 | 29.7 | 1e-09 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ lL+ GA sV+C++C+t+ XP_010919877.1 66 CGGCHMLLMHMHGAYSVQCSCCHTI 90 ***********************97 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.8e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+ lL+YP GA+sV+Ca+C++V XP_010919877.1 104 CANCHMLLMYPDGARSVKCAVCNFV 128 9**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 5.1E-5 | 22 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 5.5E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.1E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.4E-10 | 64 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.2E-9 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.8E-11 | 101 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-12 | 104 | 128 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPVPLIPYAA PPVPFTPPNG SQSQIVCSGC RNLLLYPLGA TSVCCAVCNA VTVVPSPGTE 60 MARLVCGGCH MLLMHMHGAY SVQCSCCHTI NLALEANQVA HVNCANCHML LMYPDGARSV 120 KCAVCNFVTS IVDSPSSEQK LDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919877.1 | 1e-100 | protein LSD1 isoform X1 | ||||
Swissprot | Q0J7V9 | 6e-69 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | W1PNK2 | 2e-78 | W1PNK2_AMBTC; Uncharacterized protein | ||||
STRING | ERN09291 | 4e-79 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-54 | lsd one like 1 |
Publications ? help Back to Top | |||
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