PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919873.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 42672 Da PI: 5.6549 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 7.7e-52 | 5 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd+elv +yLkkkv+g k++l evi+ +++yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nrat+sgyWkatg+d++++ XP_010919873.1 5 LPPGFRFHPTDDELVGYYLKKKVDGIKFDL-EVIPLIELYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATASGYWKATGRDRKII 98 79****************************.99**************96434556788************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++ gl+ktLvfy+grap ge+tdWvmheyrl XP_010919873.1 99 C-ESSVHGLRKTLVFYRGRAPGGERTDWVMHEYRL 132 *.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-59 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.984 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-29 | 6 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSLSLPPGFR FHPTDDELVG YYLKKKVDGI KFDLEVIPLI ELYKFDPWEL PDKSFLPKRD 60 MEWFFFCPRD RKYPNGSRTN RATASGYWKA TGRDRKIICE SSVHGLRKTL VFYRGRAPGG 120 ERTDWVMHEY RLCEYRSDGS SNFVGAFSLC HIVKRHDHGQ KIGDLQGESR ARKGHSSAMT 180 DFSPKMCFSN VLSTSEENQS VVIDLNRSNG STRSNSLENL RGNELHQIMI DSDQTDLCRS 240 RVVSDASKVS SPKEGISESM ITNVFPSSIE ICTPCNPSPF SSCENFREEA YMIDELNGHG 300 CSSSCPSPVY CMDMFSSVED ITLQSLEWDT PKYMNASSSV AGIETWNPVF PPPICRQASV 360 GEEVNLWFQD DSMVIVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 2 | 161 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919872.1 | 0.0 | NAC domain-containing protein 71 isoform X1 | ||||
TrEMBL | A0A2H3YBG5 | 0.0 | A0A2H3YBG5_PHODC; NAC transcription factor 25-like | ||||
STRING | XP_008796307.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 2e-81 | NAC domain containing protein 71 |