PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919762.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 576aa    MW: 64467.2 Da    PI: 7.3067
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919762.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.51.1e-14741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_010919762.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-10445No hitNo description
CDDcd002022.53E-14653No hitNo description
PfamPF003202.0E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139192.3E-8282364IPR028020ASX homology domain
PfamPF165501.0E-10296361IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MGKHGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPMHA REPIDSEELK  60
VPKVKSISFK SKEQKLHKKK QSVITLESER EMPYSGQNFR KIADGDPSNR SSSGSVISYS  120
ESCAHFGTTD ASDMTGSAQS NVWDSQVPSK RRTGVTRSKP SPVEKLTKDL YTIWHEQQPS  180
YQGSSEGDLL YESGTPMDSF EIGYGSILIR NSKSIEEESE ASSLPVDNKS CITNEAYSGI  240
AFFPVHSESK GIRLLDSGND KLKKSTAQVT RENVRRDKFS YDKLQILRDR ESSLCSTDLQ  300
DVINFEELMR YLTHEEQQRL MKYLPPIDTA KPPESLKSMF SSPQFVESLS HFQQLLQEGI  360
FDLSFSGANV EECRTLRKLV LLNLTKFKWV EYYKHLKDAN HKQITEGKEM VSRQKAPGFR  420
TSASLKKTRD GQNQNYPELK ETMRSPKRLC KSGSTNLLSR NPTQLNCSDV GSKLTDDADD  480
FLDNEGACFS PRSFFASPPD RGTMLAPLQF SDDSTDHDLL LDVPCNGSFP EAELLCHPWK  540
QKAAQSSSPA ESGVAQGEES LSNFPSSVSN KQLNHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919762.10.0GATA transcription factor 27 isoform X1
TrEMBLA0A2H3Y8B90.0A0A2H3Y8B9_PHODC; GATA transcription factor 27-like
STRINGXP_008794912.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-102GATA transcription factor 26