PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 390aa MW: 42505.8 Da PI: 7.0297 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114 | 2.1e-35 | 61 | 153 | 2 | 82 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec...eaess 78 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL++ ak ai+el+++ + + +++++ XP_010919706.1 61 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKHAKGAIDELAELprwyppaatyasssnP------SpppNQHDH 149 79**************************************************************8877776655432221......121112221 PP TCP 79 sssa 82 + XP_010919706.1 150 LHDQ 153 1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-31 | 61 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.226 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEESPPHHHH HHSHDEQKLL HHHNHHHHQQ RPPPHNSRLG TLREGGGQVV EVAGGHIVRS 60 TGRKDRHSKV CTAKGLRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKHAKGAIDE 120 LAELPRWYPP AATYASSSNP SPPPNQHDHL HDQPVPTEPS AEQAAYSTGN FLPPPLDSDS 180 IADTIKTFFP LATTTASSSY QNHHPPDLLS RSSSQVQDLR LSLQSFQDPM FHQNQIPTAS 240 SQQNFLPGYL AFDATSASWP EQNQRIVAWN VAETSSGEGG GGYGFNMPPP QTVPLHPALG 300 QSQLLSQRGT LQSSILPSVR AWMDPIAAAA GHQIHPAGVH SSSPSVTTTG FVFSGDGGFS 360 GFHIPARIQG EEEHGCIPGK PPSDSSASNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-21 | 68 | 121 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-21 | 68 | 121 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019705962.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_029120885.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_029120891.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 3e-86 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2H3Y662 | 0.0 | A0A2H3Y662_PHODC; transcription factor TCP4-like | ||||
STRING | XP_008793767.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-72 | TCP family protein |