PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919661.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34704.1 Da    PI: 8.1991
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919661.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-18127181256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010919661.1 127 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 181
                     788899***********************************************98 PP
2HD-ZIP_I/II127.84.6e-41127216191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_010919661.1 127 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 216
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.4E-272103IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.8E-18112181IPR009057Homeodomain-like
SuperFamilySSF466892.22E-18120184IPR009057Homeodomain-like
PROSITE profilePS5007117.313123183IPR001356Homeobox domain
SMARTSM003891.6E-16125187IPR001356Homeobox domain
PfamPF000465.1E-16127181IPR001356Homeobox domain
CDDcd000862.48E-14127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PfamPF021832.4E-11183217IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.8E-27183226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMVEKEDLGL SLSLRSSETR FPLQLNLMPP PPSSSSHSHP QPPFLKSQWS DLLASSERRT  60
EGPLLMRGID VNRAPAAERE SEEEAGTSSP NSTVSSVSGK RGGAEEHEAE RACSRGVSDE  120
EEGEGSRKKL RLSKDQSAIL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE FLKRCCENLT EENRRLQKEV QELRALKLSP QIYMHMTPPT TLTMCPSCER  240
VSNSTNTATA SAPSTVPPPP DHHPLLHHHH HHHHHHRPIP IAPAATAATP APWAPIPLRP  300
SFLDATPQRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131SRKKLRL
2175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919661.10.0homeobox-leucine zipper protein HAT4
SwissprotP466019e-95HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A2H3YU261e-153A0A2H3YU26_PHODC; homeobox-leucine zipper protein HAT4
STRINGXP_008803829.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-73homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]