PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 19804.2 Da PI: 7.7709 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.7 | 7.5e-07 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P++ K +Ka++L +++eY+k+Lq XP_010919574.1 3 ALQKLVPNS-----SKTEKASMLDEVIEYLKQLQ 31 699999997.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-10 | 1 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.553 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.13E-8 | 1 | 35 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-10 | 1 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKALQKLVPN SSKTEKASML DEVIEYLKQL QAQVQMMSRM STMMMPMTMP QLQMSMMAHM 60 AQMAQMAHMG MGMGMGMGMM DLNSLNQLSH ASLPPLVHPS AFLPLSTTCW DGSGDKMQQS 120 GGTVHPDLFS AFLAYQTAQQ QPPPPVAQPR EPPVGMDAYS WMAALHQQSR QQPPPGNPKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919575.2 | 2e-87 | transcription factor UNE10 | ||||
TrEMBL | B9RD58 | 3e-45 | B9RD58_RICCO; DNA binding protein, putative | ||||
STRING | XP_002511647.1 | 6e-46 | (Ricinus communis) | ||||
STRING | XP_008796095.1 | 2e-48 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 8e-18 | bHLH family protein |