PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 40612 Da PI: 6.4418 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 226 | 248 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_010919568.1 226 YQCGTCKKVFRSYQALGGHRASH 248 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.34E-7 | 3 | 26 | No hit | No description |
Pfam | PF13912 | 8.9E-5 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.016 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.34E-7 | 221 | 248 | No hit | No description |
Pfam | PF13912 | 3.0E-10 | 226 | 250 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.18 | 226 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.098 | 226 | 248 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 228 | 248 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-9 | 280 | 303 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.704 | 281 | 303 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.43 | 281 | 303 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 283 | 303 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MEKHTCKLCF RRFANGRALG GHMRSHVTLA TPPAKAQLLH DSSASSTSAF SREAAAAALE 60 EVEERGGDVE GKGIGLCYGL RENPRKSFRL VDPEFSSSFP AVEAVSSSIV QDRESETESS 120 RDPPSHRRRS KRPRQAAPPP PPEPPEPEPA SSVSDTTPEE DVALSLMMLS RDFWTKTKTQ 180 AEDEDEEQRS NGWDEEDDAE EEENEGQIVA SRSRPLPPAA RGRSKYQCGT CKKVFRSYQA 240 LGGHRASHKK SRGGCIPAVQ TQIHDAESSK GNADREANKV HECPFCFRVF GSGQALGGHK 300 RSHLVSSAAA TTITISSPAP LPPSPSLPRI IGRCGENFSF IDLNLPAPLE DDTELSAVSD 360 AEFIAKRRNL PSN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919568.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger protein ZAT4 | ||||
TrEMBL | A0A2H3YBR4 | 0.0 | A0A2H3YBR4_PHODC; zinc finger protein ZAT4-like | ||||
STRING | XP_008796144.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-34 | C2H2-like zinc finger protein |