PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919534.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 811aa MW: 86704.8 Da PI: 5.9742

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919534.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271	3.8e-83	441	810	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaalklfs 85 lve+L+++A++v++g+ a+ +Larl+++ sp+g+p+ R ++yf+eAL++ l++ s+ ++ +p +t++ s+ +la+lk fs XP_010919534.1 441 LVEQLFKAAKMVEAGESDGARGILARLNHQlPSPQGKPLIRSTFYFKEALNRILNDAASNSTQSPSPANTHRAFpnpiscaveSVLKLASLKSFS 535 689***********************998*******************996666666555555554437788887666667777788 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 +vsPil f+++t+ qa+le+++g++++Hi+Df+++ G++W a++q+La+R+ +gpp+lRi +++spe+ + le La A++l++pfe XP_010919534.1 536 DVSPILMFTNFTCIQALLESLAGADCIHIVDFNVGSGTHWSAFMQELAQRSctaGGPPMLRISVFVSPEAYHPFDLELACGTLAFWAARLNIPFE 630 *************************************************9999************************************ PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 fnv+ +l+++++ ++r + +aVnl + + l s +++L+ vk+l Pkvv+ v+ d+++ sF ++fl+a++ +++l+ds++ XP_010919534.1 631 FNVM---DLDNFDPVAIRGLVDAPIAVNLPVCSAHNL-------S--PTLLRRVKQLTPKVVISVDLGRDRSELSFSHHFLHAFQSCMVLLDSID 713 8...8889999999888999***99777776.......3..68*****************************************9 PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 a ++ e ++k+E++ll ++i++ v ++++ ++ Wr + +aGF p+++s++++ qa +ll++v+++g++ve+++gsl+l+W++++L XP_010919534.1 714 AA-GTSREVAMKIEQFLLWPRIESSVLGRHRA----SDKMLPWRTLFASAGFVPLQFSSTTELQAVCLLQRVPVRGFHVEKREGSLFLYWQHQEL 803 98.677899**************99998....88899************************************************** PP GRAS 368 vsvSaWr 374 vsvSaWr XP_010919534.1 804 VSVSAWR 810 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.573	415	790	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-80	441	810	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MSLSGDGKRT LEELVGEAKE EEQAIFVGEH KKQRRGGKKE GSEPRSVLET RRSLSPPTST 60 STLSPSLCGG GGGGSSDTAC LAAAAAVSDG PLAKEGGGAE AQRREEWALE LQPITAGLDI 120 GFTSGERGGL GMEDWEAVFS EPAGSPGQDQ TSLHWIMGDV DDPTNFPALS VGVMKKSRSN 180 ETPENEVSGA LSSSGAASGG SRQQALFSPV PTEFDDHSAG LGFGGLVDPG SGVGTIGGMD 240 DAPSVCTSTI TLPTTPPFSC SNHSSGAGGL SLSSSNSSTS SSRIPPPPPN TVIQDPTFGC 300 QPSHTLFPPP RPATVIPSAP PQAGMCFQEP IVDRPQLFFS NPLLNEQLQL LAPPNPGFFV 360 PAPSFVSSSA THQPLLPPQL FSSRIPTRPP FPHPSGRPDL FLQTSHLAQQ SFPSSQSIAY 420 HQKQRSASGD DAASQQQEQA LVEQLFKAAK MVEAGESDGA RGILARLNHQ LPSPQGKPLI 480 RSTFYFKEAL NRILNDAASN STQSPSPANT HRAFPNPISC AVESVLKLAS LKSFSDVSPI 540 LMFTNFTCIQ ALLESLAGAD CIHIVDFNVG SGTHWSAFMQ ELAQRSCTAG GPPMLRISVF 600 VSPEAYHPFD LELACGTLAF WAARLNIPFE FNVMDLDNFD PVAIRGLVDA PIAVNLPVCS 660 AHNLSPTLLR RVKQLTPKVV ISVDLGRDRS ELSFSHHFLH AFQSCMVLLD SIDAAGTSRE 720 VAMKIEQFLL WPRIESSVLG RHRASDKMLP WRTLFASAGF VPLQFSSTTE LQAVCLLQRV 780 PVRGFHVEKR EGSLFLYWQH QELVSVSAWR C

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MSLSGDGKRT LEELVGEAKE EEQAIFVGEH KKQRRGGKKE GSEPRSVLET RRSLSPPTST  60
STLSPSLCGG GGGGSSDTAC LAAAAAVSDG PLAKEGGGAE AQRREEWALE LQPITAGLDI  120
GFTSGERGGL GMEDWEAVFS EPAGSPGQDQ TSLHWIMGDV DDPTNFPALS VGVMKKSRSN  180
ETPENEVSGA LSSSGAASGG SRQQALFSPV PTEFDDHSAG LGFGGLVDPG SGVGTIGGMD  240
DAPSVCTSTI TLPTTPPFSC SNHSSGAGGL SLSSSNSSTS SSRIPPPPPN TVIQDPTFGC  300
QPSHTLFPPP RPATVIPSAP PQAGMCFQEP IVDRPQLFFS NPLLNEQLQL LAPPNPGFFV  360
PAPSFVSSSA THQPLLPPQL FSSRIPTRPP FPHPSGRPDL FLQTSHLAQQ SFPSSQSIAY  420
HQKQRSASGD DAASQQQEQA LVEQLFKAAK MVEAGESDGA RGILARLNHQ LPSPQGKPLI  480
RSTFYFKEAL NRILNDAASN STQSPSPANT HRAFPNPISC AVESVLKLAS LKSFSDVSPI  540
LMFTNFTCIQ ALLESLAGAD CIHIVDFNVG SGTHWSAFMQ ELAQRSCTAG GPPMLRISVF  600
VSPEAYHPFD LELACGTLAF WAARLNIPFE FNVMDLDNFD PVAIRGLVDA PIAVNLPVCS  660
AHNLSPTLLR RVKQLTPKVV ISVDLGRDRS ELSFSHHFLH AFQSCMVLLD SIDAAGTSRE  720
VAMKIEQFLL WPRIESSVLG RHRASDKMLP WRTLFASAGF VPLQFSSTTE LQAVCLLQRV  780
PVRGFHVEKR EGSLFLYWQH QELVSVSAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-25	447	809	25	378	Protein SCARECROW
5b3h_A	3e-25	447	809	24	377	Protein SCARECROW
5b3h_D	3e-25	447	809	24	377	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919532.1	0.0	scarecrow-like protein 22
Refseq	XP_010919533.1	0.0	scarecrow-like protein 22
Refseq	XP_010919534.1	0.0	scarecrow-like protein 22
Refseq	XP_029119961.1	0.0	scarecrow-like protein 22
TrEMBL	A0A2H3XPQ9	0.0	A0A2H3XPQ9_PHODC; scarecrow-like protein 27
STRING	XP_008786976.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-87	GRAS family protein