PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 334aa    MW: 38754.6 Da    PI: 6.8385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919471.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1821.4e-5671361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kkv+++++el +vik+vd+yk+ePwdL++  k+   e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_010919471.1   7 VPPGFRFHPTDEELVDYYLRKKVASRRIEL-DVIKDVDLYKIEPWDLQErcKIGMeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPI 100
                     69****************************.9***************963433333556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  XP_010919471.1 101 YS-KNNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                     **.899*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-625156IPR003441NAC domain
PROSITE profilePS5100560.8097156IPR003441NAC domain
PfamPF023659.1E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SRRIELDVIK DVDLYKIEPW DLQERCKIGM  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YSKNNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKKVTA IRRVSEHESP CWYDEQTSFM  180
PDLDSPKRIV PQPDMAYHQH LYSCKPDLEL HHLMPQDPFH QLPQLESPKL PNYVNHGCAL  240
QPSSVAPEDP MLPGHQLQFI SIYNCSGSND LSVEQVTDWR VLDKFVASQL SHDDVSKEPN  300
NSNSAQVFQV SDKEKAPVEY ASTSTSSGQI NLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-53615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120187.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-140NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2H3ZEN30.0A0A2H3ZEN3_PHODC; NAC domain-containing protein 7-like
STRINGXP_008812366.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-132NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]