PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919389.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1851aa MW: 207333 Da PI: 5.0443

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919389.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.7	7.1e-17	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ +++qle Le+ ++ + yps++ r eL++k+gL++rq ++WF+ rR k++k XP_010919389.1 31 SKRQMKSPYQLELLEKTYAVETYPSEALRVELSAKTGLSDRQLQMWFCHRRLKDRK 86 6899**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-15	18	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.111	27	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-15	28	86	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-14	29	91	IPR001356	Homeobox domain
CDD	cd00086	1.38E-13	30	86	No hit	No description
Pfam	PF00046	1.7E-14	31	86	IPR001356	Homeobox domain
SMART	SM00571	3.1E-19	606	665	IPR018501	DDT domain
PROSITE profile	PS50827	16.697	606	665	IPR018501	DDT domain
Pfam	PF02791	3.0E-18	607	662	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	788	855	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-9	1011	1055	IPR028942	WHIM1 domain
Pfam	PF15613	8.4E-14	1194	1266	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1851 aa Download sequence Send to blast
MEIGEGGEGK PPPEGLKKPA STPEGGEVKP SKRQMKSPYQ LELLEKTYAV ETYPSEALRV 60 ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPA AAAAGGDAMM GSGAAPVGSS 120 SNPFAGGLGS GGETRKAVSR AAAAVSRIGA EMPSAGRRYY EPPPGLLLQH TPPAQPLPLS 180 MSELRVIASV EAQLGEPLRE DGPILGVEFD PLPPGAFGAP IAMTPQQKQP LRPYDGKLFE 240 RHDGKASTFL PSMEHCFIPS SSSGKKKQAL GGSNVVHPQM GSRALHEYQF LPEQPSVQSE 300 TYDRFPQSHF YDSSVDAPGT RMPSLPSGGQ YLHGNEQVAP SYTFQGQMTG ASLLSHQGRQ 360 QIYSSVSTEY DNAPHSSSFT TAPSDTQFGV HEVMTLENPY LSSDRRIFRE EGSSRMERKR 420 KNEEARIAKE VEAHERRIRK ELEKQDILRR KREEQMRREM ERHDRERRKE EERVMREKQR 480 EEERFHREQR RELERREKFM LKESRRAEKM RQKEELRREK EAARLKAANE RATARRLARE 540 YMELIEDERL ELMELAASSK GLPLIFSLDS DTLQQLDSFR DMLSSFPPKS VRLKRPFAIQ 600 PWRDSDENIG NLLMVWKFLI TFADILGLWP FTLDEFVQSL HDYDCRLLGE IHVALLKSII 660 KDIEDVARTP AMALGANQNS AANPGGGHPQ IVEGAYAWGF NICSWQRHLN YLTWPEILRQ 720 FALSAGFGPQ LKKRNMERAY FRDDNEGNDG EDVIFTLRNG SAAENAVALM QEKGYTHRRR 780 SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE ASIAAALSRD 840 TRLFERTAPS TYCVRTPFRK DPADAEAILS AAREKIQIFQ SGLSDSEEAE KDTEYVDDAE 900 RDEDSECDVA DDPEIDDVEA KLNKTVPFAN ELEVTRTSTS LGNEKEEAVG DEVDLTPQNG 960 SRNVEKGLPI PPSENSKVIS ASGASQSLDI NSNCHGVVNA DMENTEIDES NFGAQWVQGL 1020 TEGDYFDLSV EERLNALVAL IGVAIEGNSI RVILEERLEA ANALKKQMWS EAQLDKRRFK 1080 EEYTSKLQYS SFMGSKAEAT QINAALEEGQ TPPPTFENQS CDGNPNTINS DQFVEQSSQI 1140 NVSNASAEKN SLGQDFSSNA DTLPLQQYGY APEKSRSQLK SYIGHKAEQL YVYRSLPLGQ 1200 DRRRNRYWQF STSASPNDPG SGRIFFESKD GFWRVIDSEE AFDALLASLD TRGIRESHLH 1260 SMLQRIETTF KEAIRRKKCT TSLNSVEGSI KSGANEMMSS PDCTTELDSP SSTICGLTSD 1320 GLEFSTSFKI DLGRNDIEKS AALKRYQGYL RWMWKECYNP HILSAMKYGK KRCSELLQTC 1380 HFCYQSYLAE ERHCPSCHKT FKTFYNADAN FSEHVTMCEE KRKMDTECKV QVSDSSLSIG 1440 IKLLKAQLAV IEVSIPSEAL QPFWTEGYRK SWGVKLHSSS SAEELFQILT LLEGAIRRDC 1500 LSSDFETTTE LLSSTTPGLA VDNTVLLSGS VPVLPWVPDT AAAVALRLLD LDSSVSYMLH 1560 QKLESHKEKE VREFIKLSSR YAVVKSIQDL DPTDTSDQVD YLKEAKWLDP GSGRRGRGRG 1620 SRGRGGRGRG RGGRGSRGNG SYTRAEFRDE NINCFEKTTR KYARRGRTRG RGGRRRGRRT 1680 VRPRQRSESR VPAVQKETLF GNFNNVSNIV KQDSVESPRS SGGEEWGLEE TSRAYIEDDD 1740 NSEGSQSDEN GQALGDKYDD QVADYVIDYD DSKPIGLMDD ESQEDDDAEG DEEGDEDIEE 1800 DEVDHNGHEG LDADVDDEDE DEIGDDGEEV GNGVGNGDEE GASSFSSEYS D

Sequence ? help Back to Top

Protein Sequence Length: 1851 aa Download sequence Send to blast

MEIGEGGEGK PPPEGLKKPA STPEGGEVKP SKRQMKSPYQ LELLEKTYAV ETYPSEALRV  60
ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPA AAAAGGDAMM GSGAAPVGSS  120
SNPFAGGLGS GGETRKAVSR AAAAVSRIGA EMPSAGRRYY EPPPGLLLQH TPPAQPLPLS  180
MSELRVIASV EAQLGEPLRE DGPILGVEFD PLPPGAFGAP IAMTPQQKQP LRPYDGKLFE  240
RHDGKASTFL PSMEHCFIPS SSSGKKKQAL GGSNVVHPQM GSRALHEYQF LPEQPSVQSE  300
TYDRFPQSHF YDSSVDAPGT RMPSLPSGGQ YLHGNEQVAP SYTFQGQMTG ASLLSHQGRQ  360
QIYSSVSTEY DNAPHSSSFT TAPSDTQFGV HEVMTLENPY LSSDRRIFRE EGSSRMERKR  420
KNEEARIAKE VEAHERRIRK ELEKQDILRR KREEQMRREM ERHDRERRKE EERVMREKQR  480
EEERFHREQR RELERREKFM LKESRRAEKM RQKEELRREK EAARLKAANE RATARRLARE  540
YMELIEDERL ELMELAASSK GLPLIFSLDS DTLQQLDSFR DMLSSFPPKS VRLKRPFAIQ  600
PWRDSDENIG NLLMVWKFLI TFADILGLWP FTLDEFVQSL HDYDCRLLGE IHVALLKSII  660
KDIEDVARTP AMALGANQNS AANPGGGHPQ IVEGAYAWGF NICSWQRHLN YLTWPEILRQ  720
FALSAGFGPQ LKKRNMERAY FRDDNEGNDG EDVIFTLRNG SAAENAVALM QEKGYTHRRR  780
SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE ASIAAALSRD  840
TRLFERTAPS TYCVRTPFRK DPADAEAILS AAREKIQIFQ SGLSDSEEAE KDTEYVDDAE  900
RDEDSECDVA DDPEIDDVEA KLNKTVPFAN ELEVTRTSTS LGNEKEEAVG DEVDLTPQNG  960
SRNVEKGLPI PPSENSKVIS ASGASQSLDI NSNCHGVVNA DMENTEIDES NFGAQWVQGL  1020
TEGDYFDLSV EERLNALVAL IGVAIEGNSI RVILEERLEA ANALKKQMWS EAQLDKRRFK  1080
EEYTSKLQYS SFMGSKAEAT QINAALEEGQ TPPPTFENQS CDGNPNTINS DQFVEQSSQI  1140
NVSNASAEKN SLGQDFSSNA DTLPLQQYGY APEKSRSQLK SYIGHKAEQL YVYRSLPLGQ  1200
DRRRNRYWQF STSASPNDPG SGRIFFESKD GFWRVIDSEE AFDALLASLD TRGIRESHLH  1260
SMLQRIETTF KEAIRRKKCT TSLNSVEGSI KSGANEMMSS PDCTTELDSP SSTICGLTSD  1320
GLEFSTSFKI DLGRNDIEKS AALKRYQGYL RWMWKECYNP HILSAMKYGK KRCSELLQTC  1380
HFCYQSYLAE ERHCPSCHKT FKTFYNADAN FSEHVTMCEE KRKMDTECKV QVSDSSLSIG  1440
IKLLKAQLAV IEVSIPSEAL QPFWTEGYRK SWGVKLHSSS SAEELFQILT LLEGAIRRDC  1500
LSSDFETTTE LLSSTTPGLA VDNTVLLSGS VPVLPWVPDT AAAVALRLLD LDSSVSYMLH  1560
QKLESHKEKE VREFIKLSSR YAVVKSIQDL DPTDTSDQVD YLKEAKWLDP GSGRRGRGRG  1620
SRGRGGRGRG RGGRGSRGNG SYTRAEFRDE NINCFEKTTR KYARRGRTRG RGGRRRGRRT  1680
VRPRQRSESR VPAVQKETLF GNFNNVSNIV KQDSVESPRS SGGEEWGLEE TSRAYIEDDD  1740
NSEGSQSDEN GQALGDKYDD QVADYVIDYD DSKPIGLMDD ESQEDDDAEG DEEGDEDIEE  1800
DEVDHNGHEG LDADVDDEDE DEIGDDGEEV GNGVGNGDEE GASSFSSEYS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1623	1631	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919389.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2H3ZDL3	0.0	A0A2H3ZDL3_PHODC; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_008811887.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator