PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919381.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1854aa MW: 207674 Da PI: 5.0612

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919381.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.7	7.1e-17	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ +++qle Le+ ++ + yps++ r eL++k+gL++rq ++WF+ rR k++k XP_010919381.1 31 SKRQMKSPYQLELLEKTYAVETYPSEALRVELSAKTGLSDRQLQMWFCHRRLKDRK 86 6899**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-15	18	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.111	27	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-15	28	86	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-14	29	91	IPR001356	Homeobox domain
CDD	cd00086	1.40E-13	30	86	No hit	No description
Pfam	PF00046	1.7E-14	31	86	IPR001356	Homeobox domain
SMART	SM00571	3.1E-19	609	668	IPR018501	DDT domain
PROSITE profile	PS50827	16.697	609	668	IPR018501	DDT domain
Pfam	PF02791	3.0E-18	610	665	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	791	858	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-9	1014	1058	IPR028942	WHIM1 domain
Pfam	PF15613	8.5E-14	1197	1269	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1854 aa Download sequence Send to blast
MEIGEGGEGK PPPEGLKKPA STPEGGEVKP SKRQMKSPYQ LELLEKTYAV ETYPSEALRV 60 ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPA AAAAGGDAMM GSGAAPVGSS 120 SNPFAGGLGS GGETRKAVSR AAAAVSRIGA EMPSAGRRYY EPPPGLLLQH TPPAQPLPLS 180 MSELRVIASV EAQLGEPLRE DGPILGVEFD PLPPGAFGAP IAMTPQQKQP LRPYDGKLFE 240 RHDGKVIKAS TFLPSMEHCF IPSSSSGKKK QALGGSNVVH PQMGSRALHE YQFLPEQPSV 300 QSETYDRFPQ SHFYDSSVDA PGTRMPSLPS GGQYLHGNEQ VAPSYTFQGQ MTGASLLSHQ 360 GRQQIYSSVS TEYDNAPHSS SFTTAPSDTQ FGVHEVMTLE NPYLSSDRRI FREEGSSRME 420 RKRKNEEARI AKEVEAHERR IRKELEKQDI LRRKREEQMR REMERHDRER RKEEERVMRE 480 KQREEERFHR EQRRELERRE KFMLKESRRA EKMRQKEELR REKEAARLKA ANERATARRL 540 AREYMELIED ERLELMELAA SSKGLPLIFS LDSDTLQQLD SFRDMLSSFP PKSVRLKRPF 600 AIQPWRDSDE NIGNLLMVWK FLITFADILG LWPFTLDEFV QSLHDYDCRL LGEIHVALLK 660 SIIKDIEDVA RTPAMALGAN QNSAANPGGG HPQIVEGAYA WGFNICSWQR HLNYLTWPEI 720 LRQFALSAGF GPQLKKRNME RAYFRDDNEG NDGEDVIFTL RNGSAAENAV ALMQEKGYTH 780 RRRSRHRLTP GTVKFAAFHV LSLEGSKGLT ILEVADKIQK SGLRDLTTSK TPEASIAAAL 840 SRDTRLFERT APSTYCVRTP FRKDPADAEA ILSAAREKIQ IFQSGLSDSE EAEKDTEYVD 900 DAERDEDSEC DVADDPEIDD VEAKLNKTVP FANELEVTRT STSLGNEKEE AVGDEVDLTP 960 QNGSRNVEKG LPIPPSENSK VISASGASQS LDINSNCHGV VNADMENTEI DESNFGAQWV 1020 QGLTEGDYFD LSVEERLNAL VALIGVAIEG NSIRVILEER LEAANALKKQ MWSEAQLDKR 1080 RFKEEYTSKL QYSSFMGSKA EATQINAALE EGQTPPPTFE NQSCDGNPNT INSDQFVEQS 1140 SQINVSNASA EKNSLGQDFS SNADTLPLQQ YGYAPEKSRS QLKSYIGHKA EQLYVYRSLP 1200 LGQDRRRNRY WQFSTSASPN DPGSGRIFFE SKDGFWRVID SEEAFDALLA SLDTRGIRES 1260 HLHSMLQRIE TTFKEAIRRK KCTTSLNSVE GSIKSGANEM MSSPDCTTEL DSPSSTICGL 1320 TSDGLEFSTS FKIDLGRNDI EKSAALKRYQ GYLRWMWKEC YNPHILSAMK YGKKRCSELL 1380 QTCHFCYQSY LAEERHCPSC HKTFKTFYNA DANFSEHVTM CEEKRKMDTE CKVQVSDSSL 1440 SIGIKLLKAQ LAVIEVSIPS EALQPFWTEG YRKSWGVKLH SSSSAEELFQ ILTLLEGAIR 1500 RDCLSSDFET TTELLSSTTP GLAVDNTVLL SGSVPVLPWV PDTAAAVALR LLDLDSSVSY 1560 MLHQKLESHK EKEVREFIKL SSRYAVVKSI QDLDPTDTSD QVDYLKEAKW LDPGSGRRGR 1620 GRGSRGRGGR GRGRGGRGSR GNGSYTRAEF RDENINCFEK TTRKYARRGR TRGRGGRRRG 1680 RRTVRPRQRS ESRVPAVQKE TLFGNFNNVS NIVKQDSVES PRSSGGEEWG LEETSRAYIE 1740 DDDNSEGSQS DENGQALGDK YDDQVADYVI DYDDSKPIGL MDDESQEDDD AEGDEEGDED 1800 IEEDEVDHNG HEGLDADVDD EDEDEIGDDG EEVGNGVGNG DEEGASSFSS EYSD

Sequence ? help Back to Top

Protein Sequence Length: 1854 aa Download sequence Send to blast

MEIGEGGEGK PPPEGLKKPA STPEGGEVKP SKRQMKSPYQ LELLEKTYAV ETYPSEALRV  60
ELSAKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPA AAAAGGDAMM GSGAAPVGSS  120
SNPFAGGLGS GGETRKAVSR AAAAVSRIGA EMPSAGRRYY EPPPGLLLQH TPPAQPLPLS  180
MSELRVIASV EAQLGEPLRE DGPILGVEFD PLPPGAFGAP IAMTPQQKQP LRPYDGKLFE  240
RHDGKVIKAS TFLPSMEHCF IPSSSSGKKK QALGGSNVVH PQMGSRALHE YQFLPEQPSV  300
QSETYDRFPQ SHFYDSSVDA PGTRMPSLPS GGQYLHGNEQ VAPSYTFQGQ MTGASLLSHQ  360
GRQQIYSSVS TEYDNAPHSS SFTTAPSDTQ FGVHEVMTLE NPYLSSDRRI FREEGSSRME  420
RKRKNEEARI AKEVEAHERR IRKELEKQDI LRRKREEQMR REMERHDRER RKEEERVMRE  480
KQREEERFHR EQRRELERRE KFMLKESRRA EKMRQKEELR REKEAARLKA ANERATARRL  540
AREYMELIED ERLELMELAA SSKGLPLIFS LDSDTLQQLD SFRDMLSSFP PKSVRLKRPF  600
AIQPWRDSDE NIGNLLMVWK FLITFADILG LWPFTLDEFV QSLHDYDCRL LGEIHVALLK  660
SIIKDIEDVA RTPAMALGAN QNSAANPGGG HPQIVEGAYA WGFNICSWQR HLNYLTWPEI  720
LRQFALSAGF GPQLKKRNME RAYFRDDNEG NDGEDVIFTL RNGSAAENAV ALMQEKGYTH  780
RRRSRHRLTP GTVKFAAFHV LSLEGSKGLT ILEVADKIQK SGLRDLTTSK TPEASIAAAL  840
SRDTRLFERT APSTYCVRTP FRKDPADAEA ILSAAREKIQ IFQSGLSDSE EAEKDTEYVD  900
DAERDEDSEC DVADDPEIDD VEAKLNKTVP FANELEVTRT STSLGNEKEE AVGDEVDLTP  960
QNGSRNVEKG LPIPPSENSK VISASGASQS LDINSNCHGV VNADMENTEI DESNFGAQWV  1020
QGLTEGDYFD LSVEERLNAL VALIGVAIEG NSIRVILEER LEAANALKKQ MWSEAQLDKR  1080
RFKEEYTSKL QYSSFMGSKA EATQINAALE EGQTPPPTFE NQSCDGNPNT INSDQFVEQS  1140
SQINVSNASA EKNSLGQDFS SNADTLPLQQ YGYAPEKSRS QLKSYIGHKA EQLYVYRSLP  1200
LGQDRRRNRY WQFSTSASPN DPGSGRIFFE SKDGFWRVID SEEAFDALLA SLDTRGIRES  1260
HLHSMLQRIE TTFKEAIRRK KCTTSLNSVE GSIKSGANEM MSSPDCTTEL DSPSSTICGL  1320
TSDGLEFSTS FKIDLGRNDI EKSAALKRYQ GYLRWMWKEC YNPHILSAMK YGKKRCSELL  1380
QTCHFCYQSY LAEERHCPSC HKTFKTFYNA DANFSEHVTM CEEKRKMDTE CKVQVSDSSL  1440
SIGIKLLKAQ LAVIEVSIPS EALQPFWTEG YRKSWGVKLH SSSSAEELFQ ILTLLEGAIR  1500
RDCLSSDFET TTELLSSTTP GLAVDNTVLL SGSVPVLPWV PDTAAAVALR LLDLDSSVSY  1560
MLHQKLESHK EKEVREFIKL SSRYAVVKSI QDLDPTDTSD QVDYLKEAKW LDPGSGRRGR  1620
GRGSRGRGGR GRGRGGRGSR GNGSYTRAEF RDENINCFEK TTRKYARRGR TRGRGGRRRG  1680
RRTVRPRQRS ESRVPAVQKE TLFGNFNNVS NIVKQDSVES PRSSGGEEWG LEETSRAYIE  1740
DDDNSEGSQS DENGQALGDK YDDQVADYVI DYDDSKPIGL MDDESQEDDD AEGDEEGDED  1800
IEEDEVDHNG HEGLDADVDD EDEDEIGDDG EEVGNGVGNG DEEGASSFSS EYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1626	1634	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919381.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2H3ZDL3	0.0	A0A2H3ZDL3_PHODC; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_008811887.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator