PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919359.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 772aa    MW: 83779.9 Da    PI: 6.1522
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919359.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.98.8e-31106190187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r+em+ ++r++ lk+plWe+vs++++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  XP_010919359.1 106 RWPRQETLALLKIRSEMDAAFRDATLKGPLWEDVSRRLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 190
                     8*********************************************************************866665..*******85 PP
2trihelix109.81.8e-34497582187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r+ +e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_010919359.1 497 RWPKAEVHALIKMRSGLESRYQEAGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 582
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92299163IPR017877Myb-like domain
SMARTSM007170.0026103165IPR001005SANT/Myb domain
CDDcd122035.90E-27105170No hitNo description
PfamPF138376.0E-21105191No hitNo description
PROSITE profilePS500906.969490554IPR017877Myb-like domain
SMARTSM007170.033494556IPR001005SANT/Myb domain
CDDcd122031.58E-29496561No hitNo description
PfamPF138371.2E-23497583No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MQQQQGGSQY GVPPPPPDMT PFTSPRAHML GISNPDPLQQ QAPPQPQLAE AASPISSRPP  60
PPGTASRPPS SNFEELVPSV PGNFPDEEAL AAAGEDIERG GATGNRWPRQ ETLALLKIRS  120
EMDAAFRDAT LKGPLWEDVS RRLAELGYKR SAKKCKEKFE NVHKYYKRTK EGRAGRQDGK  180
SYRFFSQLEA LHSGSSSSAA APAPATAPAL TTAAAVANAV PTTPIGISTG IAGPSSARIQ  240
PPPVSAVAPP PMAMPTRVAT ELTPATGVTP SGISGSATAA AAGISFSSNT SSSSSSESDD  300
EETEEAGGSR EGRKRKRSGS GSSRKMMVFF EGLMKQVMER QESMQQRFLE TIEKREQDRM  360
IREEAWRRQE VARLNREHEL LAQERAMAAS RDAAIISCIQ KISGQTIQLP TVPATPVHAS  420
SVPPPPAPPQ QQSQQSQQQQ RPPTPMQPSQ QQQEFHQHHQ STEIGRHQVS SSSELVPVPE  480
QQEPVRTVNF EPVSPSRWPK AEVHALIKMR SGLESRYQEA GPKGPLWEEI SAGMQRLGYN  540
RSAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYRKKNLG GGGGGAVGIQ  600
RQQEHETDTN PNPQERSDVP ITMAPPQAPP PSQQPSAETE AKDGNNNNRN GVNSEGGGGS  660
GTIQIQTSNG GLPPSFFEGG SSAGGMTMKK PEDIVKELMD QRQQQSTMED YDKMEDPDSD  720
NIDQDDDDDD DEDDEDGKMQ YKIQFQRPNV GGGGGTTSTA APTAGSFLAM VQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156KRSAKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019705681.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2H3Y0K60.0A0A2H3Y0K6_PHODC; trihelix transcription factor GTL1 isoform X1
STRINGXP_008791630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-50Trihelix family protein