PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919351.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23382.3 Da PI: 5.2629 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 12 | 65 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++f++eq++ Le+ F+++ ++ +++ +LAk+lgL+ rqV +WFqN+Ra++k XP_010919351.1 12 KKRRFSEEQIKSLESIFQSQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 65 5679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.7 | 3.6e-39 | 12 | 103 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrr+s+eq+k+LE+ F+++ kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++y+aLk+ +d+l ++ e+L+ke++ L +++++ XP_010919351.1 12 KKRRFSEEQIKSLESIFQSQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYAALKADHDTLLSNVESLKKEKQILIKQMQK 103 9**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-18 | 6 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.912 | 7 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 10 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.84E-15 | 12 | 68 | No hit | No description |
Pfam | PF00046 | 2.2E-17 | 12 | 65 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 13 | 74 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.7E-6 | 38 | 47 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 42 | 65 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-6 | 47 | 63 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.2E-14 | 67 | 108 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDPFLDKSRS DKKRRFSEEQ IKSLESIFQS QAKLEPRKKL QLAKELGLQP RQVAIWFQNK 60 RARWKSKQLE REYAALKADH DTLLSNVESL KKEKQILIKQ MQKLTELLKK PTEESSNDDD 120 SDGGDRTRID DARPCFLVRS GDEEKKPSFF NQEEPDCLYV GEPEGGFLTS VGKPCDFNCN 180 SGSPEQCCAT ASEWWEFWPL TE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919351.1 | 1e-146 | homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q651Z5 | 2e-48 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 2e-48 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A2H3Y0L7 | 1e-122 | A0A2H3Y0L7_PHODC; homeobox-leucine zipper protein HOX6-like | ||||
STRING | XP_008791625.1 | 1e-123 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-41 | homeobox 7 |
Publications ? help Back to Top | |||
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