PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010919284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 33219.3 Da PI: 8.8916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd ll ++++ +G g+W++ ++ g+ R++k+c++rw +yl XP_010919284.1 14 RGPWSPEEDALLTNYIQCHGEGNWRSLPKNAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l XP_010919284.1 67 RGNIGPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112 677789****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.983 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.159 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.03E-10 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWSPE EDALLTNYIQ CHGEGNWRSL PKNAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI GPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLKGQG 120 IEVREGTSKG TTKRARISQK KSHNVNNSNI NHSSKKQQDK RKRKTEGEDT AEITRTKIYM 180 PKPTKFTPTL RSYDLIENSG VSEVPKTESA TSQEQKGDTT MEDLEINWYD IKEGGFFFEE 240 DDPNHVLAFD FPSKDRLLQG LYQEYYELLN SEGNQAQLNS FPDQSLFLW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919284.1 | 0.0 | myb-related protein 308 | ||||
TrEMBL | B3TLL1 | 0.0 | B3TLL1_ELAGV; MYB transcription factor MYB92 | ||||
STRING | XP_008775013.1 | 1e-173 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49330.1 | 4e-64 | myb domain protein 111 |