PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919282.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 819aa    MW: 90704.9 Da    PI: 5.6606
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919282.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23153254199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_010919282.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHSVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGND 244
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_010919282.1 245 GELRLGIRRA 254
                     999****996 PP
2Auxin_resp122.33.5e-40279360182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stksvF+++YnPr+s+seF+v++ k+ k++++++s GmRfkm++e+ed++err++G+++g+ d+dpvrWp+SkWr+L
  XP_010919282.1 279 VASAVSTKSVFHICYNPRTSPSEFIVPYCKFAKSFSHSFSTGMRFKMRYESEDAAERRYTGLITGIGDMDPVRWPGSKWRCL 360
                     6899*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-42146263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-40147262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-21151253No hitNo description
PfamPF023621.4E-21153254IPR003340B3 DNA binding domain
PROSITE profilePS5086312.76153255IPR003340B3 DNA binding domain
SMARTSM010198.8E-23153255IPR003340B3 DNA binding domain
PfamPF065072.5E-35280360IPR010525Auxin response factor
PROSITE profilePS5174521.09698780IPR000270PB1 domain
SuperFamilySSF542773.73E-9703773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MGIDLNTVEE EEEEEEAELL AAAQVPSQAH RRPQPPAEAV CLELWHACAG PLISLPRKGT  60
VVVYFPQGHL EHLGDAGGGG GGLFRYDVPP HVFCRVVDVK LLADAATDEV YARLSLVAES  120
EEVERQLQEG EAEGDVEEED IDDLHRSSMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYKQQRPS QELIAKDLHS VEWRFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL  240
RGNDGELRLG IRRAAQVKNG TPFSAPCSQS LDLGTLAAVA SAVSTKSVFH ICYNPRTSPS  300
EFIVPYCKFA KSFSHSFSTG MRFKMRYESE DAAERRYTGL ITGIGDMDPV RWPGSKWRCL  360
LVRWDDDVDT GRQNRVSPWE IEPSGSISGH NSLLLPGSKR TKISLSSVNL DFPVPNGNEF  420
PDLGESARFH KVLQGQEFMG FRTPYDGIDV ANSQETEVRN HQYLDMRRSS NNASSCILGG  480
LGSGVSVPVG NSDLPYKCIG FNESIGFRKV LQGQEVIPEN PPYQGAVADI HTRNGGFGSF  540
DALHTSGAGN RWPASSHGCT LLQPSQLSVQ ASSPSSVLMF PQASFKHPCS QSVFGVNDRS  600
TDDGVLSRKE APLYCWPHHA GGEFINEHQK PGKVHIPMHA YKPEFKNDKE ISSNVCRLFG  660
FPLTERIPLT NEVDRTERNF ETDFPTSKSQ IPAKPLGRSC TTVHKQGSVV GRVVDLSKLD  720
GYDDLICELE RLFDMKGLLN DPQKKWNVVY TDDEDDMMLL GDDPWQEFCK IASKILIYTN  780
DEEMMACCDE AHGYSAELSF PINIATFSLC CSKSSSVST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1163738816359Auxin response factor 1
4ldw_A1e-1163738816359Auxin response factor 1
4ldw_B1e-1163738816359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121009.10.0auxin response factor 15 isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A2H3Z3U30.0A0A2H3Z3U3_PHODC; Auxin response factor
STRINGXP_008808072.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-173ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]