PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919267.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 844aa    MW: 93794.4 Da    PI: 5.7416
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919267.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23153254199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_010919267.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHSVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGND 244
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_010919267.1 245 GELRLGIRRA 254
                     999****996 PP
2Auxin_resp78.41.8e-26279338160
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrls 60 
                     +a+a+stksvF+++YnPr+s+seF+v++ k+ k++++++s GmRfkm++e+ed++err+ 
  XP_010919267.1 279 VASAVSTKSVFHICYNPRTSPSEFIVPYCKFAKSFSHSFSTGMRFKMRYESEDAAERRYG 338
                     6899******************************************************73 PP
3Auxin_resp28.46.9e-113603855782
      Auxin_resp  57 rrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      r++G+++g+ d+dpvrWp+SkWr+L
  XP_010919267.1 360 FRYTGLITGIGDMDPVRWPGSKWRCL 385
                     589**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.19E-42146263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-40147262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-21151253No hitNo description
PROSITE profilePS5086312.76153255IPR003340B3 DNA binding domain
PfamPF023621.5E-21153254IPR003340B3 DNA binding domain
SMARTSM010198.8E-23153255IPR003340B3 DNA binding domain
PfamPF065073.2E-21280337IPR010525Auxin response factor
PfamPF065079.9E-7361385IPR010525Auxin response factor
PROSITE profilePS5174521.09723805IPR000270PB1 domain
SuperFamilySSF542773.92E-9728798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MGIDLNTVEE EEEEEEAELL AAAQVPSQAH RRPQPPAEAV CLELWHACAG PLISLPRKGT  60
VVVYFPQGHL EHLGDAGGGG GGLFRYDVPP HVFCRVVDVK LLADAATDEV YARLSLVAES  120
EEVERQLQEG EAEGDVEEED IDDLHRSSMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYKQQRPS QELIAKDLHS VEWRFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL  240
RGNDGELRLG IRRAAQVKNG TPFSAPCSQS LDLGTLAAVA SAVSTKSVFH ICYNPRTSPS  300
EFIVPYCKFA KSFSHSFSTG MRFKMRYESE DAAERRYGAY NLQSCDFWNQ ISIFRFSPFF  360
RYTGLITGIG DMDPVRWPGS KWRCLLVRWD DDVDTGRQNR VSPWEIEPSG SISGHNSLLL  420
PGSKRTKISL SSVNLDFPVP NGNEFPDLGE SARFHKVLQG QEFMGFRTPY DGIDVANSQE  480
TEVRNHQYLD MRRSSNNASS CILGGLGSGV SVPVGNSDLP YKCIGFNESI GFRKVLQGQE  540
VIPENPPYQG AVADIHTRNG GFGSFDALHT SGAGNRWPAS SHGCTLLQPS QLSVQASSPS  600
SVLMFPQASF KHPCSQSVFG VNDRSTDDGV LSRKEAPLYC WPHHAGGEFI NEHQKPGKVH  660
IPMHAYKPEF KNDKEISSNV CRLFGFPLTE RIPLTNEVDR TERNFETDFP TSKSQIPAKP  720
LGRSCTTVHK QGSVVGRVVD LSKLDGYDDL ICELERLFDM KGLLNDPQKK WNVVYTDDED  780
DMMLLGDDPW QEFCKIASKI LIYTNDEEMM ACCDEAHGYS AELSFPINIA TFSLCCSKSS  840
SVST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1103741316359Auxin response factor 1
4ldw_A1e-1103741316359Auxin response factor 1
4ldw_B1e-1103741316359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121009.10.0auxin response factor 15 isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A2H3Z3U30.0A0A2H3Z3U3_PHODC; Auxin response factor
STRINGXP_008808072.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-168ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]