PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 365aa MW: 37674.5 Da PI: 8.2565 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.6 | 3.3e-36 | 82 | 157 | 7 | 88 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++ + +++ +++ XP_010919196.1 82 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIAT------NVGGTLKIP 157 9**********************************************************77777333......111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.497 | 83 | 137 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-29 | 83 | 155 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDSQKQEKEE DEDRRRTDLR MAGCGSSGGG GVSGSSGGGG GGGGGMTLPP PVAIPVHRFI 60 IPKPEPIEMR GGFQILRRPT GRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG 120 ETIRWLLQHA EPAIIAATGT GTVPAIATNV GGTLKIPTEA PLTAPVTSTS TPAADAAGEE 180 ATKKRRRKLQ PSRAAGTGVA AAAAAVYYPV QDPLLPGGGA ISMSTGLAPI GAGQGMVPMW 240 AATAGGRVIP PGALWMLPPP SAIAGPSSQP QLWTFPSVPQ IINLATARTI SATTVFPPVA 300 VPPAPSSSAA AAGSSAASAP AARGDKAELQ LMGESGEQRH RQDEKQKENH EEEEEEELSE 360 SSPED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 187 | KKRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919196.1 | 0.0 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 1e-77 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 1e-77 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A2H3YTF6 | 0.0 | A0A2H3YTF6_PHODC; transcription factor PCF2-like | ||||
STRING | XP_008803243.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-53 | TCP family protein |
Publications ? help Back to Top | |||
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