PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919180.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRF
Protein Properties Length: 275aa    MW: 29100.8 Da    PI: 9.2257
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919180.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC832.6e-26132176145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+
  XP_010919180.1 132 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 176
                     69****************************************997 PP
2QLQ57.63.8e-2067102237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     aFT  Qlq+L++Q+l+yKy++a++PvP +L+++i+k
  XP_010919180.1  67 AFTFLQLQELEHQALIYKYMVAGVPVPLHLVLPIWK 102
                     8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.3E-966102IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-1567101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.79367102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.499132176IPR014977WRC domain
PfamPF088791.1E-22133175IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAEEQNPPPT QEQQQHHQQQ QSPLPPSSKV PRLSSDASEL VTMAAPSPLV LGLGLGLGVG  60
GGYSRPAFTF LQLQELEHQA LIYKYMVAGV PVPLHLVLPI WKSVAAASYG PHHYPSFMGY  120
GSLCLDYRNS MEPEPGRCRR TDGKKWRCSR DVVPDQKYCE RHMHRGRNRS RKPVEAGSGA  180
TSAPASATST ATATVTAITT AAAATLQVEA NNNINRNTAT HLSIAIPSGG GLQLMPTTNS  240
SSSSGGGSTN VSPPRLGFSP TSVLQCGTAC KTGPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919180.10.0growth-regulating factor 10
SwissprotQ6AWX71e-63GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A2H3X8S61e-121A0A2H3X8S6_PHODC; growth-regulating factor 10-like
STRINGXP_008780035.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-39growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]