PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919034.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 721aa    MW: 79755.6 Da    PI: 7.001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919034.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
   XP_010919034.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIQEHVG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.28E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.8591973IPR017930Myb domain
TIGRFAMsTIGR015572.8E-162271IPR006447Myb domain, plants
SMARTSM007179.0E-142371IPR001005SANT/Myb domain
PfamPF002499.7E-142467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-92464IPR009057Homeodomain-like
CDDcd001674.62E-102669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEGSSSGEDL IVKRRKPYTI TKRRERWTEE EHNRFLEALK LYGRAWQRIQ EHVGTKTAVQ  60
IRSHAQKFFS KLEKEALAKG IPLGHSHDIE IPPPRPKRKP SFPYPRKVDV GSLSPFEESK  120
DEKVSNSAAS QEKPVATEVE QRTKRTSGGG SCSEVFNLLQ DVPSASMSSA NKGSSNICTF  180
QHYVKEVKDK AAQGESSKTV KGNYEEEKKE ADHTDIDVDR LGRISLHSQS KFAHEERRDA  240
RKETEKFGPS LEDNQQGAQC YSKLIPGQFM DRNNAKCKQT VCSNEFIMPG TNQVEAHTDV  300
NPFKNPITLP GHESCSNCTV PSAHQQVPVF PPFTQFGSNQ DAYVSFLSSA SSSLILSTLL  360
QNSSIHAVAS LAASFWPSVN ANAPIDLTAG NLNGGMSEKQ SNPSPSMAAI AAATVAAASA  420
WWATNGLLPM FPPFHPSYAF APPSTVPGPS VDMAQAPEDN KEKKDDRPQN LLQEDHQQIM  480
DPGHPGALRT TQKASKLLPS SESELYECGR GERSLYAKLK SSAADQFEAL PDTGFLDSGK  540
TQHNKNSNRS SYSSNTLSSS EVETETMIKK HKEVNDEAEQ VHLDNHLFGE ASNHRLGSSR  600
VTNGSWKEVL GEDGPAFQAH STRELMPQRF SQLQTNDDEM PNLCKDKEVT ALPVDLRRKA  660
CESTNKFNID SEDTLVSEIE NGKLKASRRA FKPYRRCSVE AKDNQATTDE GKSDKRIRME  720
G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919033.10.0protein LHY isoform X1
RefseqXP_010919034.10.0protein LHY isoform X1
TrEMBLA0A2H3Z4A90.0A0A2H3Z4A9_PHODC; protein LHY isoform X1
STRINGXP_008808259.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.12e-42circadian clock associated 1