PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919011.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 610aa    MW: 68213.5 Da    PI: 4.3208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919011.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.22e-5091401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrFhPtdeelv++yLk k++g+ +++  vi+evd++k+ePw+Lp k  +++++ ew+fFs+rd+ky++g+r+nrat++gyWkatg+d++++
  XP_010919011.1   9 LPLGFRFHPTDEELVNYYLKGKINGRINSEVVVIPEVDVCKSEPWELPgKsVIRSDDPEWFFFSPRDRKYPNGHRSNRATDAGYWKATGRDRTIK 103
                     699***********************9888788***************6446677888************************************* PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++  +++ +g+kktLvf+ grapkg++t W+mheyr 
  XP_010919011.1 104 TRppGSTIIGMKKTLVFHLGRAPKGVRTYWIMHEYRT 140
                     *9999999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-583161IPR003441NAC domain
PROSITE profilePS5100558.459161IPR003441NAC domain
PfamPF023651.2E-2610139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MVVLPLESLP LGFRFHPTDE ELVNYYLKGK INGRINSEVV VIPEVDVCKS EPWELPGKSV  60
IRSDDPEWFF FSPRDRKYPN GHRSNRATDA GYWKATGRDR TIKTRPPGST IIGMKKTLVF  120
HLGRAPKGVR TYWIMHEYRT TESEFDSGEQ GSFVLCRLFK KPEEKSPSSN VGAIDGNVDE  180
MESSFLSPGE TPQGTDTLEE FAALLNQELL QPAMQENLQP SLNISDTQST STNNPLRPED  240
TGDHATTYPL RPEENHCNNN GASAVGDHEA GPEVDFLLDE LCEFLGPDEQ LYFDQLPNIG  300
SSSFCDNVYQ GSQMFQDNYV EQDSVTEFLD GVINNQEEDF PEVTDTQKDS APRDVPDRLI  360
CKLQVSSRDS VSGKEGGTGG DVGTIPVTMQ EGQDMDAYGH HYQSFSQSSG SSQMNNSNNY  420
HETRTDEINL LPETENALWI QSGTINFKTR QELPDMNNLM AWQGLVPRNF RLQNEIDKGS  480
MLTCRELSSK KDDNEVNSVI PEAKECAEHQ TAEDTEISGS LFLDDVEGIS DHDDATSIEA  540
MTAFSEISHE SKSVLRQRTR GTHENDDKLK GLPLQLDTPR IVCVSITRAN VILLAILLLI  600
CVVISWYLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-45816119168NAC domain-containing protein 19
3swm_B4e-45816119168NAC domain-containing protein 19
3swm_C4e-45816119168NAC domain-containing protein 19
3swm_D4e-45816119168NAC domain-containing protein 19
3swp_A4e-45816119168NAC domain-containing protein 19
3swp_B4e-45816119168NAC domain-containing protein 19
3swp_C4e-45816119168NAC domain-containing protein 19
3swp_D4e-45816119168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919011.10.0protein NTM1-like 9 isoform X1
RefseqXP_029119865.10.0protein NTM1-like 9 isoform X1
TrEMBLA0A2H3Z5370.0A0A2H3Z537_PHODC; protein NTM1-like 9
STRINGXP_008808290.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-76NAC 014