PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918996.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WOX

Protein Properties

Length: 374aa MW: 39684.2 Da PI: 7.194

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918996.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.3e-18	54	114	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_010918996.1 54 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 114 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.3	2.6e-36	53	116	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k+ XP_010918996.1 53 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKH 116 689**********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-13	49	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.511	50	115	IPR001356	Homeobox domain
SMART	SM00389	2.1E-9	52	119	IPR001356	Homeobox domain
CDD	cd00086	4.13E-9	53	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-7	53	120	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-15	54	114	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MASSNRHWPS LFKSKPCNTH SQWQHDINTS SLLSGGCQKT SYTSGCEERS PEPKPRWNPK 60 PEQIRILEAI FNSGMVNPPR DEIRKIRAQL QEYGQVGDAN VFYWFQNRKS RSKHKHRHLQ 120 SSRPHPRSAS TAPSPPTTSA PATTATSSSS PSSDRSSGSD KTIPSLASIT GLSGVTDVPA 180 SMSLAVNQLH FHVPMEFGGE PFFLQGPQTY CIPPAPDVTW TVGAPEQRTC VRSGLWSELL 240 GQEGCKSGED EAKTTMQLHH SFGVGAATSA AVASVGCAVG VSGGATTVGA AANVGVASPI 300 TELQGVGGAG GGVATRATVF INEVEFEVGT GPLNVREAFG EEAVLLHSSG HPVLTDEWGV 360 TLQPLQHGAS YYLV

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MASSNRHWPS LFKSKPCNTH SQWQHDINTS SLLSGGCQKT SYTSGCEERS PEPKPRWNPK  60
PEQIRILEAI FNSGMVNPPR DEIRKIRAQL QEYGQVGDAN VFYWFQNRKS RSKHKHRHLQ  120
SSRPHPRSAS TAPSPPTTSA PATTATSSSS PSSDRSSGSD KTIPSLASIT GLSGVTDVPA  180
SMSLAVNQLH FHVPMEFGGE PFFLQGPQTY CIPPAPDVTW TVGAPEQRTC VRSGLWSELL  240
GQEGCKSGED EAKTTMQLHH SFGVGAATSA AVASVGCAVG VSGGATTVGA AANVGVASPI  300
TELQGVGGAG GGVATRATVF INEVEFEVGT GPLNVREAFG EEAVLLHSSG HPVLTDEWGV  360
TLQPLQHGAS YYLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918996.1	0.0	WUSCHEL-related homeobox 8 isoform X1
TrEMBL	A0A2H4A099	0.0	A0A2H4A099_PHODC; WUSCHEL-related homeobox 9
STRING	XP_008811551.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-61	homeobox-3