PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918973.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SRS
Protein Properties Length: 336aa    MW: 35596.6 Da    PI: 7.8447
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918973.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.5e-701042603153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsst 89 
                      g++sCqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpa+krrerqqqlaaa++ +++++         ++ skr+re   +  +a+ +t
  XP_010918973.1 104 GGGMSCQDCGNQAKKDCVHLRCRTCCKSRGFQCPTHVKSTWVPASKRRERQQQLAAAAAFQQQHQhqqsqslrIAEPSKRPREICPRLPTAAIAT 198
                     5789************************************************9998766555544457778877788999999988888888888 PP

          DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     ++ss+     +++ s+P+evss+avfrcvrvs +d++++e+aYqtav+igGhvfkGiLydqG++
  XP_010918973.1 199 STSSGG--GGMDAMSFPAEVSSAAVFRCVRVSPMDEADDEFAYQTAVNIGGHVFKGILYDQGPD 260
                     888775..67999*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-67106260IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.0E-27108150IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.1E-26212259IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGFSLGGSH RHGGEEEEGI PPENLFLYSG SGSGSGRTEE IAYTRGFELW QQQMHRHHHH  60
HHQHLYPSST TAALLSFSDE PPPQPPQLGV GGGGGGRMRG SGSGGGMSCQ DCGNQAKKDC  120
VHLRCRTCCK SRGFQCPTHV KSTWVPASKR RERQQQLAAA AAFQQQHQHQ QSQSLRIAEP  180
SKRPREICPR LPTAAIATST SSGGGGMDAM SFPAEVSSAA VFRCVRVSPM DEADDEFAYQ  240
TAVNIGGHVF KGILYDQGPD APFPQTTTPR GHIHYGESSS SAAAAAITTA AAIATTLAGA  300
STAPASAGLL DPSSLYPTPL SAFMAGTQFF PHHPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918973.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_029119863.10.0protein SHI RELATED SEQUENCE 1
TrEMBLA0A2H3ZAE41e-141A0A2H3ZAE4_PHODC; protein SHI RELATED SEQUENCE 1-like
STRINGXP_008810878.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-54Lateral root primordium (LRP) protein-related