PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918708.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 726aa    MW: 80387.9 Da    PI: 6.5916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918708.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-08607654448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lv++v ++G g+W+ I r +      Rt  ++k++w+++l
   XP_010918708.1 607 WTLSEVMKLVEGVSRYGVGRWTEIKRLLFsssAYRTSVDLKDKWRNLL 654
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.621599658IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-11600656IPR009057Homeodomain-like
SuperFamilySSF466891.57E-15601656IPR009057Homeodomain-like
SMARTSM007177.9E-10603656IPR001005SANT/Myb domain
CDDcd116602.21E-19607655No hitNo description
PfamPF002493.6E-6607654IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEKEKEKEIA AKDERCGENA KNVVARLDEN VETVVVLEMK RKATTVHVLH ASSVPPDPSP  60
QIPIRLSLTR LESGAPALKQ SKAKQSSTFS TPPSVSLASL IRTLRLPLLF CSFDASRSPF  120
RTLSTRVGHD ASKGGTAKYG DKDKLVEPGV GVDQLTFKLV QVEGDGTFIP SLEDDAMEVE  180
HLLADPQSEK DLIVDVMHLN SENTNTFLDN EDFPCEAGCC SPKKDFGVLD SDDAHVVKQE  240
PKYEYVENMM HGIEEEGILH LPYNLSSVCP DLLDIGFPES SEMDYASENI SFMRNFGSEC  300
QTLSIERDDD AGEMLHLPNA IIPYESTSDC ATSFLDNMSA DELHDAFRSM FGRDTCVTDK  360
QWLKHRILFG LQNHTEVGSA SSLLECGLSS IENDDNMIWI PKNVPEGICI PLTNIFGSST  420
LVVGTGAGKE GHSCEDVPVA NISKVGKAGF EPLNLEERPS ALTASKRLRK PTRRYIEETS  480
EMISRGCNER AKGPIDGGPI VSSRDKLNHV KTDNRGGQVV YQEYSPRSGI QVPNDLQFRR  540
GRPKKNSTLM GAKNLGSKED MIFSVACEAA CASRLSQAEL QDGLSDDCAT STRNEKSGIR  600
RKHHRLWTLS EVMKLVEGVS RYGVGRWTEI KRLLFSSSAY RTSVDLKDKW RNLLRASGAQ  660
LHNRNQVESQ KKHMSLPIPQ SVLRRVKELS IIHPYPRDRK SRPPLVSTAA CSNSISISRS  720
GRTVHK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019705208.10.0uncharacterized protein LOC105043012
RefseqXP_029119784.10.0uncharacterized protein LOC105043012
TrEMBLA0A2H3YK890.0A0A2H3YK89_PHODC; uncharacterized protein LOC103714543 isoform X3
STRINGXP_008800048.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-53TRF-like 6