PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918708.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 726aa MW: 80387.9 Da PI: 6.5916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.5e-08 | 607 | 654 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lv++v ++G g+W+ I r + Rt ++k++w+++l XP_010918708.1 607 WTLSEVMKLVEGVSRYGVGRWTEIKRLLFsssAYRTSVDLKDKWRNLL 654 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.621 | 599 | 658 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 600 | 656 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.57E-15 | 601 | 656 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-10 | 603 | 656 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.21E-19 | 607 | 655 | No hit | No description |
Pfam | PF00249 | 3.6E-6 | 607 | 654 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MEKEKEKEIA AKDERCGENA KNVVARLDEN VETVVVLEMK RKATTVHVLH ASSVPPDPSP 60 QIPIRLSLTR LESGAPALKQ SKAKQSSTFS TPPSVSLASL IRTLRLPLLF CSFDASRSPF 120 RTLSTRVGHD ASKGGTAKYG DKDKLVEPGV GVDQLTFKLV QVEGDGTFIP SLEDDAMEVE 180 HLLADPQSEK DLIVDVMHLN SENTNTFLDN EDFPCEAGCC SPKKDFGVLD SDDAHVVKQE 240 PKYEYVENMM HGIEEEGILH LPYNLSSVCP DLLDIGFPES SEMDYASENI SFMRNFGSEC 300 QTLSIERDDD AGEMLHLPNA IIPYESTSDC ATSFLDNMSA DELHDAFRSM FGRDTCVTDK 360 QWLKHRILFG LQNHTEVGSA SSLLECGLSS IENDDNMIWI PKNVPEGICI PLTNIFGSST 420 LVVGTGAGKE GHSCEDVPVA NISKVGKAGF EPLNLEERPS ALTASKRLRK PTRRYIEETS 480 EMISRGCNER AKGPIDGGPI VSSRDKLNHV KTDNRGGQVV YQEYSPRSGI QVPNDLQFRR 540 GRPKKNSTLM GAKNLGSKED MIFSVACEAA CASRLSQAEL QDGLSDDCAT STRNEKSGIR 600 RKHHRLWTLS EVMKLVEGVS RYGVGRWTEI KRLLFSSSAY RTSVDLKDKW RNLLRASGAQ 660 LHNRNQVESQ KKHMSLPIPQ SVLRRVKELS IIHPYPRDRK SRPPLVSTAA CSNSISISRS 720 GRTVHK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019705208.1 | 0.0 | uncharacterized protein LOC105043012 | ||||
Refseq | XP_029119784.1 | 0.0 | uncharacterized protein LOC105043012 | ||||
TrEMBL | A0A2H3YK89 | 0.0 | A0A2H3YK89_PHODC; uncharacterized protein LOC103714543 isoform X3 | ||||
STRING | XP_008800048.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 7e-53 | TRF-like 6 |