PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 1626aa MW: 181323 Da PI: 6.5664 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00062 | 1510 | 1534 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C C +sF+++ +L H r++ XP_010918698.1 1510 FECDveGCQMSFRTRGELSLHKRNC 1534 789999*****************95 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00059 | 1593 | 1619 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg++F+ s++ rH r+ H XP_010918698.1 1593 YKCKvsGCGQTFRFVSDFSRHRRKtgH 1619 99*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 1.1E-12 | 15 | 55 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.037 | 16 | 57 | IPR003349 | JmjN domain |
Pfam | PF02375 | 5.7E-13 | 17 | 50 | IPR003349 | JmjN domain |
SMART | SM00558 | 1.1E-48 | 234 | 403 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 4.12E-27 | 235 | 399 | No hit | No description |
PROSITE profile | PS51184 | 34.267 | 237 | 403 | IPR003347 | JmjC domain |
Pfam | PF02373 | 2.5E-37 | 267 | 386 | IPR003347 | JmjC domain |
SMART | SM00355 | 9.4 | 1510 | 1532 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.177 | 1533 | 1562 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 17 | 1533 | 1557 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.71E-5 | 1533 | 1570 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 1535 | 1557 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 1535 | 1561 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene3D | G3DSA:3.30.160.60 | 1.7E-10 | 1562 | 1587 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.9E-4 | 1563 | 1587 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.009 | 1563 | 1592 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1565 | 1587 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-10 | 1573 | 1615 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-11 | 1588 | 1616 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.088 | 1593 | 1619 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 1593 | 1624 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1595 | 1619 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1626 aa Download sequence Send to blast |
MAAPEIPAWL KGLPMAPEYR PTETEFADPI AFISRIEGEA AAFGICKVIP PLPKPSKKFV 60 LANLNRSLCT SPDPVPGSCP AATGDAAVFT TRHQELGSRR TRAPVHKQVW QSGEVYTLEQ 120 FEARSKAFAR SQLGGFKEVS PLLVEALFWK AASEKPIYVE YANDVPGSGF AVPEEPFRYY 180 SHRRLRRKRG FNRGRVQEPK FSCLAASREA RQQNVSVAES NEREGTVTGT AGWKLSNSPW 240 NLQAIARSPG SLTRFMPDEV PGVTSPMVYI GMLFSWFAWH VEDHELHSLN FLHMGSPKTW 300 YAVPGEYAAT LEEIVRVQGY GGNVDRLTAF TMLGEKTTLL SPEVLVASGV PCCRLVQHPG 360 EFVVTFPRAY HVGFSHGFNC GEAANFATPQ WLKVAKEAAV RRAAMSYLPM LSHQQLLYML 420 TMSFVSRVPR ELLPGVRSSR LSDRKKEERE ILVKKAFLDD MMNENRLLCD LLAKISIPHV 480 VLWEPELLPF PCTVHQSCSS SISREAHGLL VDDDCGRAQP QLKGKNSFDC KEDDCCVVDA 540 DKAEANVNSI SSQNISSETQ KNTCHPECMS SHGEVMDSAD VDEDDLPFGL HVDSGSLACV 600 ACGILGYPFM AILQPSEKAL KELFSLNCEE SDLKLEKSES SGQPLHLPNP EKKFYSDLEQ 660 NGIKPEEWRK ADLTCNLSLE QSGHASDAPS AIKEPSSYST KVPEVTCESI VQTRADNTLG 720 TCILSNNSAN DMEYLHMFSP MEHLVGEQNL QSENTVCAPG KESVCQHSNE LHSFDKEKEY 780 DGTVHMKTDA IFQNDLCCSN PSSAKPLNKT ERLLGTTVAR CCHENTKWNT SNGFLRSRIF 840 CLQHALEIEE LLRCKGGAHV LIICHSDYLK IKALAISIAE EIGIQFNCKD VPLENASPPE 900 LDLINTSIDD EEHEEDGKDW TSKLGVNLKY CIKLRKQQPS NQEQVANQER LALSLGGIFS 960 NPSLVSPILN LKWLCRKSRS QYKVIGTIQS KSYIDANTEK SEPVTENPNV NPANEIQVYK 1020 SRKNERNDMA SKHRACPRKD APKELDAYND VAMVNRDDHK NTSGHTHQTG RVVDVSTDNL 1080 LTVPILFAEY PRMHRDGWAT KKISTQHIVL DSPKSCNLSV PVDSPIVSCE NPPGIHCSKL 1140 DNIMIVSDPG KVETSHPYFN VPMLECSDLG QGGVEGSMSR CKAGSLDKPR FEVNIVMLEG 1200 EYSEVQREEK VVDETNSEHE IHGTVKPVCV PTSRTFDRSE DQPEMVMANI STLEGSLGMP 1260 SLSEEQLTVP FLSSNSSEMH LNIVALNKSV PKNVGANSAE GNIEMQEEVP AAREGILQDD 1320 VVSGNESQFT VDNSVVESSQ IQQEAHLAND TPANCKAVDY LRSEYHSVTT KPVIDDSRTS 1380 ANAGSVSVVD VLGVQEVTEN TRDVTLSVGN DNFPQNVERH NNTPTRVDLI HYVRRRNKRK 1440 REAEKITESR NSCISFVRSP CEGLRPRTGR PTALMSDMSI MEEKVTPTKA NKRLERLVVL 1500 KGKEKGKEAF ECDVEGCQMS FRTRGELSLH KRNCCTYEGC GKRFRSHKYA MRHQCVHDDE 1560 RPLKCPWKGC NMSFKWAWAR TEHIRVHTGE RPYKCKVSGC GQTFRFVSDF SRHRRKTGHY 1620 VNSPAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 4e-65 | 9 | 417 | 8 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 4e-65 | 9 | 417 | 8 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1433 | 1439 | RRRNKRK |
2 | 1434 | 1441 | RRNKRKRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010918698.1 | 0.0 | lysine-specific demethylase SE14 isoform X1 | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | A0A2H3WXV7 | 0.0 | A0A2H3WXV7_PHODC; lysine-specific demethylase SE14 | ||||
STRING | XP_008775348.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |