PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918641.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 332aa    MW: 36697.3 Da    PI: 8.2552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918641.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
   XP_010918641.1 14 KGPWSPEEDSKLKEFIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding37.55.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010918641.1  69 GEFSDDEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.343962IPR017930Myb domain
SuperFamilySSF466897.65E-2711109IPR009057Homeodomain-like
SMARTSM007175.1E-131364IPR001005SANT/Myb domain
PfamPF002493.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231569IPR009057Homeodomain-like
CDDcd001676.67E-101662No hitNo description
PROSITE profilePS5129421.88963117IPR017930Myb domain
SMARTSM007171.7E-1167115IPR001005SANT/Myb domain
PfamPF002499.3E-1169111IPR001005SANT/Myb domain
CDDcd001675.61E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI  120
APSQRTPHQQ PQQQKQLQQQ LLFPSSSSSS HGSYYTSPIP PLPVLESLPP ISQNALGTVP  180
TTTFPTLLQG PPYQYQMMKE SAHMIMFGSE QSCSSSDGSS TQISYGKEMD YNYIGRSGGA  240
EQMGFESDLC AAGIEETHRW LLGGGGGGAQ VERDYGLSRL WEEAPLEYNY EEIKQLLGSL  300
NGYTNNGDRN LSLGDPTGSG VRGSFKSQGR VM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119772.10.0transcription factor RAX2-like
TrEMBLA0A2H3Z6N30.0A0A2H3Z6N3_PHODC; myb-related protein 308
STRINGXP_008808878.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36