PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 554aa MW: 62559.4 Da PI: 8.6616 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.1e-19 | 46 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd+ll++av+q+ g++Wk+Ia+ ++ Rt+ qc +rwqk+l XP_010918509.1 46 KGGWTDEEDDLLIKAVRQFNGKNWKKIAELFP-DRTDVQCLHRWQKVL 92 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 98 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd+l++++v+++G ++W+ Ia+ ++ gR +kqc++rw+++l XP_010918509.1 98 KGTWTREEDDLIIQLVEKHGYKRWSVIAKSLP-GRIGKQCRERWHNHL 144 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 59.3 | 8.7e-19 | 150 | 192 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT eE+e lv+a++ +G++ W+ Ia++++ gRt++++k++w+ XP_010918509.1 150 KDAWTREEEEVLVRAHQIYGNK-WAEIAKYLP-GRTDNSIKNHWN 192 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.101 | 41 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-17 | 45 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-17 | 46 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 48 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.53E-14 | 49 | 92 | No hit | No description |
PROSITE profile | PS51294 | 30.682 | 93 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-32 | 95 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-18 | 98 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-15 | 100 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 106 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.14 | 149 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-18 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 150 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 151 | 199 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.62E-13 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MVAEVKREDK KGERIQEATP TLDIGSETKP MTIPGRTSGP TRRSTKGGWT DEEDDLLIKA 60 VRQFNGKNWK KIAELFPDRT DVQCLHRWQK VLNPELVKGT WTREEDDLII QLVEKHGYKR 120 WSVIAKSLPG RIGKQCRERW HNHLNPAIKK DAWTREEEEV LVRAHQIYGN KWAEIAKYLP 180 GRTDNSIKNH WNCSVKKRLD SYLASGFMEQ PLGAVDRVQN AKCSEANPLK RSAIGFTSRD 240 WKLNADRLIT FNVGLGHQNT SPKRQCLDLQ STSRGDSKCL RAGSIPTLPE DSKHLSIEVE 300 SNEEDDSKYT TSVETDYESS KRSQSNLSSS VELALGDMNK NNRDTSISSL PACKQSHSDM 360 TAGINRILTT RLHCENENLG SSCYAPLQWM NVDGCLSSEK LFRSNNHIQP TPSPIHCSTP 420 PDLSLSLACI PSSPESILRS AAKGFKKTPS IIRKRGRNSY KPLFPEKLKM ETMDANCPSG 480 VNNFQWRAKN FKDDLESEYV HQTGSNNQVN LNRSVYLSGD QLCSSHKKHE DFAVTKSVEK 540 RLEGEFNAEC GLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-67 | 46 | 199 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-67 | 46 | 199 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010918509.1 | 0.0 | transcription factor MYB3R-2 | ||||
TrEMBL | A0A3Q0IA03 | 0.0 | A0A3Q0IA03_PHODC; transcription factor MYB3R-2-like | ||||
STRING | XP_008796801.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29448 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 5e-96 | myb domain protein 3r-4 |