PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 554aa    MW: 62559.4 Da    PI: 8.6616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918509.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.1e-194692148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd+ll++av+q+ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010918509.1 46 KGGWTDEEDDLLIKAVRQFNGKNWKKIAELFP-DRTDVQCLHRWQKVL 92
                     688*****************************.************986 PP

2Myb_DNA-binding58.31.7e-1898144148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd+l++++v+++G ++W+ Ia+ ++ gR +kqc++rw+++l
   XP_010918509.1  98 KGTWTREEDDLIIQLVEKHGYKRWSVIAKSLP-GRIGKQCRERWHNHL 144
                      799*****************************.*************97 PP

3Myb_DNA-binding59.38.7e-19150192145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT eE+e lv+a++ +G++ W+ Ia++++ gRt++++k++w+
   XP_010918509.1 150 KDAWTREEEEVLVRAHQIYGNK-WAEIAKYLP-GRTDNSIKNHWN 192
                      679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1014192IPR017930Myb domain
SuperFamilySSF466892.28E-164298IPR009057Homeodomain-like
SMARTSM007175.4E-174594IPR001005SANT/Myb domain
PfamPF002494.6E-174692IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2248105IPR009057Homeodomain-like
CDDcd001673.53E-144992No hitNo description
PROSITE profilePS5129430.68293148IPR017930Myb domain
SuperFamilySSF466892.66E-3295191IPR009057Homeodomain-like
SMARTSM007171.8E-1797146IPR001005SANT/Myb domain
PfamPF002494.9E-1898144IPR001005SANT/Myb domain
CDDcd001671.04E-15100144No hitNo description
Gene3DG3DSA:1.10.10.603.1E-27106150IPR009057Homeodomain-like
PROSITE profilePS5129422.14149199IPR017930Myb domain
SMARTSM007178.7E-18149197IPR001005SANT/Myb domain
PfamPF002492.4E-16150192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-23151199IPR009057Homeodomain-like
CDDcd001673.62E-13152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVAEVKREDK KGERIQEATP TLDIGSETKP MTIPGRTSGP TRRSTKGGWT DEEDDLLIKA  60
VRQFNGKNWK KIAELFPDRT DVQCLHRWQK VLNPELVKGT WTREEDDLII QLVEKHGYKR  120
WSVIAKSLPG RIGKQCRERW HNHLNPAIKK DAWTREEEEV LVRAHQIYGN KWAEIAKYLP  180
GRTDNSIKNH WNCSVKKRLD SYLASGFMEQ PLGAVDRVQN AKCSEANPLK RSAIGFTSRD  240
WKLNADRLIT FNVGLGHQNT SPKRQCLDLQ STSRGDSKCL RAGSIPTLPE DSKHLSIEVE  300
SNEEDDSKYT TSVETDYESS KRSQSNLSSS VELALGDMNK NNRDTSISSL PACKQSHSDM  360
TAGINRILTT RLHCENENLG SSCYAPLQWM NVDGCLSSEK LFRSNNHIQP TPSPIHCSTP  420
PDLSLSLACI PSSPESILRS AAKGFKKTPS IIRKRGRNSY KPLFPEKLKM ETMDANCPSG  480
VNNFQWRAKN FKDDLESEYV HQTGSNNQVN LNRSVYLSGD QLCSSHKKHE DFAVTKSVEK  540
RLEGEFNAEC GLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-67461996159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-67461996159MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918509.10.0transcription factor MYB3R-2
TrEMBLA0A3Q0IA030.0A0A3Q0IA03_PHODC; transcription factor MYB3R-2-like
STRINGXP_008796801.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2944824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.25e-96myb domain protein 3r-4