PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918406.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 283aa MW: 28357.7 Da PI: 10.5886

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918406.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.7e-39	44	143	3	93
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s + s+s+s+s+ XP_010918406.1 44 VKKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStLTVSLRHSSSASTSSsapldlkp 138 69****************************************************************99888755555544443333322344443 PP TCP 89 kaaks 93 ++++s XP_010918406.1 139 HSSAS 143 22222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-34	49	141	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	49	103	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGGADGGANG GPLTDHSHQR QPQITASAAG SNGNGAGAGN SMLVKKAPSK DRHSKVDGRG 60 RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTLTVSL 120 RHSSSASTSS SAPLDLKPHS SASAATGGAA QHLLPQPLAP APFILGKRLR PDDDSAAGKD 180 DAGGAGLGAA GGFWAVPARS DFGQVWSFAA PEMVVPQASL SGRFAAAAAL AAQPVGEASA 240 ARVGNYLPMA QGHLNLLASL SGTPAAAAAA AAAAAGRRED EPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918406.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	3e-79	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2H3XPX2	1e-146	A0A2H3XPX2_PHODC; transcription factor TCP7-like
STRING	XP_008787053.1	1e-147	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-52	TCP family protein