PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918251.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 832aa MW: 92940.5 Da PI: 6.7492

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918251.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	515	565	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l+kyF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ XP_010918251.1 515 EKTIGLQELQKYFAGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKIKKV 565 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	504	585	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-26	518	565	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.52E-23	730	819	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-24	733	815	No hit	No description
SMART	SM00666	2.0E-27	734	817	IPR000270	PB1 domain
PROSITE profile	PS51745	24.646	734	817	IPR000270	PB1 domain
Pfam	PF00564	1.7E-17	735	816	IPR000270	PB1 domain
CDD	cd06407	1.84E-41	735	816	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MNNPSSELHS SWWIQPSAHM ETMEERLIRA INYIKDSQRD GDVLVQIWVP TRIGDRHVLT 60 TRGQPFTLDS TCQRLVNYRT VSTQYQFSAE ENSNVAVGLP GRVFLGRVPE WTPDVRYFSH 120 YEYPRVNDAQ RYDVRGSLAL PVFDRNSRSC LGVVEVVMTT QKINYSSDLE NICNALQAVN 180 LRSSEVPGVP HVKVCNESYQ VALPEIQRVL RAVCETHSLP LAQTWISCIQ QGKSGSRHTD 240 ENYKDCVSTV DVACYVRDPT MLGFHQACSE HHLFKGQGVS GKAFTTNQPC FSSDITAFSK 300 TEYPLSHHAK LFHLRAAVAI RLRSIHTGTA DFVLELFLPI NCIEHEEQKL MLNSLSITIQ 360 QVCQSLRVVT SKELEHEAIL QVAQLNSSNV LPDKFVSETS QRLDDDDNLL TESPMIGVSG 420 EVSSWSGSIR ETQENGGKSV LPTSVPLDFN EQEIEGLSVW HTSEVVLPAG KIFSEFKQHE 480 EELTKDSIDH KTFFSGEPGF SNTEKAMEKR RTKTEKTIGL QELQKYFAGS LKDAAKSLGV 540 CPTTLKRICR QHGISRWPSR KIKKVGHSLR KLQVVIDSVH GPEGTFQFSS LYENFTKATW 600 SNESLPGSTS FSTLKQKENP ESSTANQQQE AKLSSHTSGS NSLSSSSCSH SSSSSLGCSS 660 GTKQCSNAQL SIKQEISVEE NQSGMLNKIQ IPIELQLSAK EGPISLARSQ SHELLSEQPF 720 SGTHAALHWS RHDSLKVKAI YGEDKVIFKL QPTWGFQDLK QEIGKRLNIG NINLVALKYL 780 DDDSEWVLLT CDADLQECID VYKLSSARTI RISVHHVPQE ITKSSLGHSP DN

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MNNPSSELHS SWWIQPSAHM ETMEERLIRA INYIKDSQRD GDVLVQIWVP TRIGDRHVLT  60
TRGQPFTLDS TCQRLVNYRT VSTQYQFSAE ENSNVAVGLP GRVFLGRVPE WTPDVRYFSH  120
YEYPRVNDAQ RYDVRGSLAL PVFDRNSRSC LGVVEVVMTT QKINYSSDLE NICNALQAVN  180
LRSSEVPGVP HVKVCNESYQ VALPEIQRVL RAVCETHSLP LAQTWISCIQ QGKSGSRHTD  240
ENYKDCVSTV DVACYVRDPT MLGFHQACSE HHLFKGQGVS GKAFTTNQPC FSSDITAFSK  300
TEYPLSHHAK LFHLRAAVAI RLRSIHTGTA DFVLELFLPI NCIEHEEQKL MLNSLSITIQ  360
QVCQSLRVVT SKELEHEAIL QVAQLNSSNV LPDKFVSETS QRLDDDDNLL TESPMIGVSG  420
EVSSWSGSIR ETQENGGKSV LPTSVPLDFN EQEIEGLSVW HTSEVVLPAG KIFSEFKQHE  480
EELTKDSIDH KTFFSGEPGF SNTEKAMEKR RTKTEKTIGL QELQKYFAGS LKDAAKSLGV  540
CPTTLKRICR QHGISRWPSR KIKKVGHSLR KLQVVIDSVH GPEGTFQFSS LYENFTKATW  600
SNESLPGSTS FSTLKQKENP ESSTANQQQE AKLSSHTSGS NSLSSSSCSH SSSSSLGCSS  660
GTKQCSNAQL SIKQEISVEE NQSGMLNKIQ IPIELQLSAK EGPISLARSQ SHELLSEQPF  720
SGTHAALHWS RHDSLKVKAI YGEDKVIFKL QPTWGFQDLK QEIGKRLNIG NINLVALKYL  780
DDDSEWVLLT CDADLQECID VYKLSSARTI RISVHHVPQE ITKSSLGHSP DN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119702.1	0.0	protein NLP1 isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A2H4A0L6	0.0	A0A2H4A0L6_PHODC; protein NLP1-like
STRING	XP_008812750.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]