PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918250.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 956aa MW: 106433 Da PI: 5.6459

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918250.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.6e-29	639	689	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l+kyF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ XP_010918250.1 639 EKTIGLQELQKYFAGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKIKKV 689 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	628	709	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	642	689	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.08E-23	854	943	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-24	857	939	No hit	No description
PROSITE profile	PS51745	24.646	858	941	IPR000270	PB1 domain
SMART	SM00666	2.0E-27	858	941	IPR000270	PB1 domain
CDD	cd06407	5.19E-41	859	940	No hit	No description
Pfam	PF00564	2.0E-17	859	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MEDNVLPTAS LPERALSDVV VELDLMDEFL SVPGFDCSDF LQPGTSTSTS PFSSSGFSPL 60 FEVSNGGCNP VLPEDNNQDD VERSVFSVDL PSDEIQIELL DRMQSPDPNA GEQPKFSAQL 120 NELRMNNPSS ELHSSWWIQP SAHMETMEER LIRAINYIKD SQRDGDVLVQ IWVPTRIGDR 180 HVLTTRGQPF TLDSTCQRLV NYRTVSTQYQ FSAEENSNVA VGLPGRVFLG RVPEWTPDVR 240 YFSHYEYPRV NDAQRYDVRG SLALPVFDRN SRSCLGVVEV VMTTQKINYS SDLENICNAL 300 QAVNLRSSEV PGVPHVKVCN ESYQVALPEI QRVLRAVCET HSLPLAQTWI SCIQQGKSGS 360 RHTDENYKDC VSTVDVACYV RDPTMLGFHQ ACSEHHLFKG QGVSGKAFTT NQPCFSSDIT 420 AFSKTEYPLS HHAKLFHLRA AVAIRLRSIH TGTADFVLEL FLPINCIEHE EQKLMLNSLS 480 ITIQQVCQSL RVVTSKELEH EAILQVAQLN SSNVLPDKFV SETSQRLDDD DNLLTESPMI 540 GVSGEVSSWS GSIRETQENG GKSVLPTSVP LDFNEQEIEG LSVWHTSEVV LPAGKIFSEF 600 KQHEEELTKD SIDHKTFFSG EPGFSNTEKA MEKRRTKTEK TIGLQELQKY FAGSLKDAAK 660 SLGVCPTTLK RICRQHGISR WPSRKIKKVG HSLRKLQVVI DSVHGPEGTF QFSSLYENFT 720 KATWSNESLP GSTSFSTLKQ KENPESSTAN QQQEAKLSSH TSGSNSLSSS SCSHSSSSSL 780 GCSSGTKQCS NAQLSIKQEI SVEENQSGML NKIQIPIELQ LSAKEGPISL ARSQSHELLS 840 EQPFSGTHAA LHWSRHDSLK VKAIYGEDKV IFKLQPTWGF QDLKQEIGKR LNIGNINLVA 900 LKYLDDDSEW VLLTCDADLQ ECIDVYKLSS ARTIRISVHH VPQEITKSSL GHSPDN

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MEDNVLPTAS LPERALSDVV VELDLMDEFL SVPGFDCSDF LQPGTSTSTS PFSSSGFSPL  60
FEVSNGGCNP VLPEDNNQDD VERSVFSVDL PSDEIQIELL DRMQSPDPNA GEQPKFSAQL  120
NELRMNNPSS ELHSSWWIQP SAHMETMEER LIRAINYIKD SQRDGDVLVQ IWVPTRIGDR  180
HVLTTRGQPF TLDSTCQRLV NYRTVSTQYQ FSAEENSNVA VGLPGRVFLG RVPEWTPDVR  240
YFSHYEYPRV NDAQRYDVRG SLALPVFDRN SRSCLGVVEV VMTTQKINYS SDLENICNAL  300
QAVNLRSSEV PGVPHVKVCN ESYQVALPEI QRVLRAVCET HSLPLAQTWI SCIQQGKSGS  360
RHTDENYKDC VSTVDVACYV RDPTMLGFHQ ACSEHHLFKG QGVSGKAFTT NQPCFSSDIT  420
AFSKTEYPLS HHAKLFHLRA AVAIRLRSIH TGTADFVLEL FLPINCIEHE EQKLMLNSLS  480
ITIQQVCQSL RVVTSKELEH EAILQVAQLN SSNVLPDKFV SETSQRLDDD DNLLTESPMI  540
GVSGEVSSWS GSIRETQENG GKSVLPTSVP LDFNEQEIEG LSVWHTSEVV LPAGKIFSEF  600
KQHEEELTKD SIDHKTFFSG EPGFSNTEKA MEKRRTKTEK TIGLQELQKY FAGSLKDAAK  660
SLGVCPTTLK RICRQHGISR WPSRKIKKVG HSLRKLQVVI DSVHGPEGTF QFSSLYENFT  720
KATWSNESLP GSTSFSTLKQ KENPESSTAN QQQEAKLSSH TSGSNSLSSS SCSHSSSSSL  780
GCSSGTKQCS NAQLSIKQEI SVEENQSGML NKIQIPIELQ LSAKEGPISL ARSQSHELLS  840
EQPFSGTHAA LHWSRHDSLK VKAIYGEDKV IFKLQPTWGF QDLKQEIGKR LNIGNINLVA  900
LKYLDDDSEW VLLTCDADLQ ECIDVYKLSS ARTIRISVHH VPQEITKSSL GHSPDN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918248.1	0.0	protein NLP1 isoform X1
Refseq	XP_010918249.1	0.0	protein NLP1 isoform X1
Refseq	XP_010918250.1	0.0	protein NLP1 isoform X1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A2H4A0L6	0.0	A0A2H4A0L6_PHODC; protein NLP1-like
STRING	XP_008812750.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]