PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917677.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TALE

Protein Properties

Length: 645aa MW: 71126.7 Da PI: 6.5546

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917677.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	407	444	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + XP_010917677.1 407 FEHflHPYPKDSEKLMLARQTGLTRSQVSNWFINARVR 444 664459******************************88 PP
2	BELL	122.3	2.1e-39	270	341	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLl +l+eVd rYkqy++q+q+v+ssF+++ag g+akpYt+lAl++iS+hFrcL+dai +qi XP_010917677.1 270 ERQDLQNKVTKLLAMLDEVDSRYKQYYHQMQIVVSSFDIIAGFGAAKPYTALALQTISQHFRCLRDAIGGQI 341 799*****************************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.0E-55	191	339	IPR006563	POX domain
Pfam	PF07526	2.2E-49	197	337	IPR006563	POX domain
PROSITE profile	PS50071	12.406	385	448	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	388	452	IPR001356	Homeobox domain
CDD	cd00086	1.78E-12	388	449	No hit	No description
SuperFamily	SSF46689	1.41E-17	389	455	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-28	391	454	IPR009057	Homeodomain-like
Pfam	PF05920	1.7E-17	405	444	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MATFYTSSTN QRDAMPNLCL RDPDALTGDA QSQQNSVELP VPTAMISQGS SVEGAHMVSS 60 HLGKNAYNAW RDGRIEMSFM QTIGGPISGS GNLVRNSVSN ECQMGLQTQL GTLNGQNLSL 120 QQSNVSTMQN QGLSLSLSTE ILVPSFQYRP TSSDISLFGP HQSNLGNGGS CRDDDSGNKN 180 MHANLSPYGV SSHTSSVPNS KYLKAAQELL VEVVNVRKAL KHKADNGQSV HSSAGTTGCK 240 DTDGASKSEG MPSNPQESTA NSSSELSPSE RQDLQNKVTK LLAMLDEVDS RYKQYYHQMQ 300 IVVSSFDIIA GFGAAKPYTA LALQTISQHF RCLRDAIGGQ IRATRKSLGE QDSSISQGGG 360 IARLRYIDQQ LRQQRAMQQF GMMQQHSWRP QRGLPESSVS ILRAWLFEHF LHPYPKDSEK 420 LMLARQTGLT RSQVSNWFIN ARVRLWKPMI EDMYKEEFGG TEIDSNSSSE NPPKCKDEIR 480 SSEDREDLQN FSAERSQTNQ LNDSKSKAIH TMDTGRASAS FQHETNSNNA YMNLKLNEQR 540 PTSDDGSLLQ DTLTHSDGSG RYMAYQMAEV GRYGNTGFSL TLGLQHCDGS VPISNNQHRF 600 LTVRGEDIYG AAAPIGADTA DYEFMNMEDR QHRFGSSNLQ HDFVA

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MATFYTSSTN QRDAMPNLCL RDPDALTGDA QSQQNSVELP VPTAMISQGS SVEGAHMVSS  60
HLGKNAYNAW RDGRIEMSFM QTIGGPISGS GNLVRNSVSN ECQMGLQTQL GTLNGQNLSL  120
QQSNVSTMQN QGLSLSLSTE ILVPSFQYRP TSSDISLFGP HQSNLGNGGS CRDDDSGNKN  180
MHANLSPYGV SSHTSSVPNS KYLKAAQELL VEVVNVRKAL KHKADNGQSV HSSAGTTGCK  240
DTDGASKSEG MPSNPQESTA NSSSELSPSE RQDLQNKVTK LLAMLDEVDS RYKQYYHQMQ  300
IVVSSFDIIA GFGAAKPYTA LALQTISQHF RCLRDAIGGQ IRATRKSLGE QDSSISQGGG  360
IARLRYIDQQ LRQQRAMQQF GMMQQHSWRP QRGLPESSVS ILRAWLFEHF LHPYPKDSEK  420
LMLARQTGLT RSQVSNWFIN ARVRLWKPMI EDMYKEEFGG TEIDSNSSSE NPPKCKDEIR  480
SSEDREDLQN FSAERSQTNQ LNDSKSKAIH TMDTGRASAS FQHETNSNNA YMNLKLNEQR  540
PTSDDGSLLQ DTLTHSDGSG RYMAYQMAEV GRYGNTGFSL TLGLQHCDGS VPISNNQHRF  600
LTVRGEDIYG AAAPIGADTA DYEFMNMEDR QHRFGSSNLQ HDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	6e-17	394	451	1	58	Homeobox protein Meis1
4xrs_B	6e-17	394	451	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917677.1	0.0	BEL1-like homeodomain protein 7 isoform X4
Refseq	XP_029119537.1	0.0	BEL1-like homeodomain protein 7 isoform X4
Refseq	XP_029119538.1	0.0	BEL1-like homeodomain protein 7 isoform X4
Swissprot	Q9SIW1	1e-135	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A2H3ZDJ6	0.0	A0A2H3ZDJ6_PHODC; BEL1-like homeodomain protein 7 isoform X3
STRING	XP_008812196.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-129	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]