PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917672.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TALE

Protein Properties

Length: 687aa MW: 76190.5 Da PI: 6.5925

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917672.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	449	486	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + XP_010917672.1 449 FEHflHPYPKDSEKLMLARQTGLTRSQVSNWFINARVR 486 664459******************************88 PP
2	BELL	122.2	2.2e-39	312	383	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLl +l+eVd rYkqy++q+q+v+ssF+++ag g+akpYt+lAl++iS+hFrcL+dai +qi XP_010917672.1 312 ERQDLQNKVTKLLAMLDEVDSRYKQYYHQMQIVVSSFDIIAGFGAAKPYTALALQTISQHFRCLRDAIGGQI 383 799*****************************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.0E-55	233	381	IPR006563	POX domain
Pfam	PF07526	2.5E-49	239	379	IPR006563	POX domain
PROSITE profile	PS50071	12.406	427	490	IPR001356	Homeobox domain
CDD	cd00086	2.67E-12	430	491	No hit	No description
SMART	SM00389	1.0E-9	430	494	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.54E-17	431	497	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-28	433	496	IPR009057	Homeodomain-like
Pfam	PF05920	1.9E-17	447	486	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MLVVSVVLSW LNRWNNYEQF AADYYSDHCI KISNCLKSRE REMATFYTSS TNQRDAMPNL 60 CLRDPDALTG DAQSQQNSVE LPVPTAMISQ GSSVEGAHMV SSHLGKNAYN AWRDGRIEMS 120 FMQTIGGPIS GSGNLVRNSV SNECQMGLQT QLGTLNGQNL SLQQSNVSTM QNQGLSLSLS 180 TEILVPSFQY RPTSSDISLF GPHQSNLGNG GSCRDDDSGN KNMHANLSPY GVSSHTSSVP 240 NSKYLKAAQE LLVEVVNVRK ALKHKADNGQ SVHSSAGTTG CKDTDGASKS EGMPSNPQES 300 TANSSSELSP SERQDLQNKV TKLLAMLDEV DSRYKQYYHQ MQIVVSSFDI IAGFGAAKPY 360 TALALQTISQ HFRCLRDAIG GQIRATRKSL GEQDSSISQG GGIARLRYID QQLRQQRAMQ 420 QFGMMQQHSW RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKLMLARQTG LTRSQVSNWF 480 INARVRLWKP MIEDMYKEEF GGTEIDSNSS SENPPKCKDE IRSSEDREDL QNFSAERSQT 540 NQLNDSKSKA IHTMDTGRAS ASFQHETNSN NAYMNLKLNE QRPTSDDGSL LQDTLTHSDG 600 SGRYMAYQMA EVGRYGNTGF SLTLGLQHCD GSVPISNNQH RFLTVRGEDI YGAAAPIGAD 660 TADYEFMNME DRQHRFGSSN LQHDFVA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MLVVSVVLSW LNRWNNYEQF AADYYSDHCI KISNCLKSRE REMATFYTSS TNQRDAMPNL  60
CLRDPDALTG DAQSQQNSVE LPVPTAMISQ GSSVEGAHMV SSHLGKNAYN AWRDGRIEMS  120
FMQTIGGPIS GSGNLVRNSV SNECQMGLQT QLGTLNGQNL SLQQSNVSTM QNQGLSLSLS  180
TEILVPSFQY RPTSSDISLF GPHQSNLGNG GSCRDDDSGN KNMHANLSPY GVSSHTSSVP  240
NSKYLKAAQE LLVEVVNVRK ALKHKADNGQ SVHSSAGTTG CKDTDGASKS EGMPSNPQES  300
TANSSSELSP SERQDLQNKV TKLLAMLDEV DSRYKQYYHQ MQIVVSSFDI IAGFGAAKPY  360
TALALQTISQ HFRCLRDAIG GQIRATRKSL GEQDSSISQG GGIARLRYID QQLRQQRAMQ  420
QFGMMQQHSW RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKLMLARQTG LTRSQVSNWF  480
INARVRLWKP MIEDMYKEEF GGTEIDSNSS SENPPKCKDE IRSSEDREDL QNFSAERSQT  540
NQLNDSKSKA IHTMDTGRAS ASFQHETNSN NAYMNLKLNE QRPTSDDGSL LQDTLTHSDG  600
SGRYMAYQMA EVGRYGNTGF SLTLGLQHCD GSVPISNNQH RFLTVRGEDI YGAAAPIGAD  660
TADYEFMNME DRQHRFGSSN LQHDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-17	436	493	1	58	Homeobox protein Meis1
4xrs_B	7e-17	436	493	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917672.1	0.0	BEL1-like homeodomain protein 7 isoform X2
Swissprot	Q9SIW1	1e-134	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A2H3ZDJ6	0.0	A0A2H3ZDJ6_PHODC; BEL1-like homeodomain protein 7 isoform X3
STRING	XP_008812196.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-128	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]