PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917560.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 29553.7 Da    PI: 10.0815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917560.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849e-274089251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rie+k+ rqv+fskRr g+lKKA+EL vLCdaev +iifs +gkly+++s
  XP_010917560.1 40 RIEDKTSRQVSFSKRRSGLLKKAHELAVLCDAEVGLIIFSAKGKLYDFAS 89
                    8***********************************************86 PP
2K-box37.41.1e-131291982695
           K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      ++e Lq  q  l   ++ +Lsl eL q+e++L+ +lk+  s+K++l++++i +l++k ++l ee + L 
  XP_010917560.1 129 TKYELLQIAQWSLDESNVAQLSLDELSQIEKDLDWALKQTMSRKTQLMMDMIVRLREKGQALLEERRFLV 198
                     5778888888888889999**********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.023191IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-373190IPR002100Transcription factor, MADS-box
CDDcd002651.99E-4033106No hitNo description
SuperFamilySSF554551.83E-3033109IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283353IPR002100Transcription factor, MADS-box
PfamPF003191.2E-244087IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-285368IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-286889IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.08117214IPR002487Transcription factor, K-box
PfamPF014862.4E-10129198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFGSLVGPTS PPKGPLSRVQ RARVRVPAAA MVRGRVELRR IEDKTSRQVS FSKRRSGLLK  60
KAHELAVLCD AEVGLIIFSA KGKLYDFAST SSMEKIIERY CQFSEAERGV NRGNFGVQGL  120
VKGFACPRTK YELLQIAQWS LDESNVAQLS LDELSQIEKD LDWALKQTMS RKTQLMMDMI  180
VRLREKGQAL LEERRFLVSM GATEKGKESE EHRHGDGEGN NNSGNGSERN WAGTEEAGGA  240
CPSTWHGLGT RRPQMHVLRD LFRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-2031105174MEF2 CHIMERA
6byy_B5e-2031105174MEF2 CHIMERA
6byy_C5e-2031105174MEF2 CHIMERA
6byy_D5e-2031105174MEF2 CHIMERA
6bz1_A5e-2031105174MEF2 CHIMERA
6bz1_B5e-2031105174MEF2 CHIMERA
6bz1_C5e-2031105174MEF2 CHIMERA
6bz1_D5e-2031105174MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119491.11e-173truncated transcription factor CAULIFLOWER A
TrEMBLA0A2H3Z9061e-133A0A2H3Z906_PHODC; truncated transcription factor CAULIFLOWER A-like isoform X1
STRINGXP_008810235.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2887322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-39MIKC_MADS family protein