PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917437.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 1056aa    MW: 117599 Da    PI: 6.5536
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917437.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.7e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_010917437.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldytMQPPAQ--ELIAKDLHDISWTFRHIYRGQPKRHLLTTGWSVFVSTKRLVAGDSVLFI--RDE 217
                     99*****************************96555544..8************************************************..456 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010917437.1 218 KSQLLLGIRRA 228
                     77789999997 PP
2Auxin_resp123.61.4e-40253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldp++W+nS+Wr+L+
  XP_010917437.1 253 AAHAAANNSPFTIFYNPRASPSEFVIPFAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPLQWKNSQWRNLQ 335
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-45117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-42119242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-21126227No hitNo description
PfamPF023628.6E-21127228IPR003340B3 DNA binding domain
SMARTSM010194.7E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224127229IPR003340B3 DNA binding domain
PfamPF065071.3E-35253335IPR010525Auxin response factor
PfamPF023096.6E-99371026IPR033389AUX/IAA domain
PROSITE profilePS5174525.9839401024IPR000270PB1 domain
SuperFamilySSF542776.15E-89531019No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MKGPVSNGFA ANPAEGERKS INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK  60
VTDSMPNYPS LPSKLICVLH NVTLHADAET DEVYAQMTLQ PVNKYDREAM LASEMGLKQN  120
KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDYTM QPPAQELIAK DLHDISWTFR  180
HIYRGQPKRH LLTTGWSVFV STKRLVAGDS VLFIRDEKSQ LLLGIRRANR QQPALSSSVL  240
SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPSEFVIPF AKYNKAMYTQ VSLGMRFRMM  300
FETEESGVRR YMGTITGISD LDPLQWKNSQ WRNLQVGWDE STATERRTRV SIWEIEPVAT  360
PFYICPPPFF KPKFSKQPGM LDDKMEIENT FNRVMPWLGD DFGLKDAQSA VFPGLSLVQW  420
MAMQQNSQLM APAAQSTYFP STAASAMQDG LGTEDPTKIL NFQSHALPSS YLQSSSKLNP  480
QTQQFDKQHQ PPLLSSQQPL QPQQQISIHH HHQQQQQPPP LQQNTAHLLP LQQQQQRQEQ  540
AELQQQHLQQ QQPRVAANQE LIDQQQHQPV RSQPLPPTQL SNQILQPPSS NVQQQGLPKP  600
NTQHQQGACS PNPGSLQPSS LPQILQVQQP VDHQNTLFQQ QQQHLQQLMQ PQLQLQLLQK  660
LQQQQLLSQL GPQLQSQSSQ QLTQHNQHFQ QQQNLQPQLN GTNILPAQVK QLQQMPAMYD  720
SNHLKPQLPA RAHSTLSENK APSCSTSPST NCHSSSNLLN RVQQGPAVLV GEIGVPHMEN  780
LLQELQSKSD VQVKHELHCT KEPTQLPNQH ATVDQLDASS ATSFCVDGST HEGISLPPIL  840
DGDVQVDPRD NLLVGTYSDG LMPDALLSRG LGSGKDIQNL ISGYGNQGDV ETELSTAAIS  900
SQSFGVPHMP FKPGCSSDAA ANESGVLNQG FWSSQPQRMR TYTKVQKRGA VGRSIDITRY  960
KGYDELRHDL ACMFGIEGQL EDPHRTDWKL VYVDHENDIL LVGDDPWEEF VNCVQSIKIL  1020
SAAEVQQMSL DGDLSNIPVQ NQAYSGSNNN GDLWRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1701635645388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917437.30.0auxin response factor 16 isoform X1
TrEMBLA0A2H3Y3G20.0A0A2H3Y3G2_PHODC; Auxin response factor
STRINGXP_008792838.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19