PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917295.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79894.3 Da    PI: 7.1515
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917295.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.1e-211671156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q+++Le++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  XP_010917295.1 16 KKRYHRHTPRQIQQLEAMFKECPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71
                    688999***********************************************998 PP
2START178.73.5e-562124353206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     a  a++el+++++ +ep+W+k      e++n +++ ++f++ +         +ea+r+sg+v+m ++ lv  ++d++ +W e ++    k  tle
  XP_010917295.1 212 ATNAMEELIRLVQTDEPLWTKPGgdgrEILNLETYDRIFPKLRHqfkspdILIEASRDSGLVFMSAVALVDLFMDSR-KWAESFPtivsKSRTLE 305
                     5679*****************9999999999999999999877788999999***************9999999999.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+  g      g l lm+ e+q+lsp+vp R+f+f+Ry++q+++g w+i+dvSv+  + ++   +  R+++lpSg+li++++ng+skvtwvehv+
  XP_010917295.1 306 VLAAGmggsrsGSLLLMYEEMQVLSPVVPtREFYFLRYCQQMEQGLWAIADVSVELSRANQ-FVPPFRSRRLPSGCLIQDMPNGYSKVTWVEHVE 399
                     ***********************************************************99.78999**************************** PP

                     --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      ++++p h l+r lv+sg+a+ga++w+atlqr ce+
  XP_010917295.1 400 IEEKTPtHRLYRDLVNSGVAFGAQRWLATLQRMCER 435
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-20673IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-231078IPR009057Homeodomain-like
PROSITE profilePS5007117.9771373IPR001356Homeobox domain
SMARTSM003892.2E-191477IPR001356Homeobox domain
PfamPF000461.7E-181671IPR001356Homeobox domain
CDDcd000864.98E-191674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084853.591201438IPR002913START domain
SuperFamilySSF559611.87E-37202436No hitNo description
CDDcd088754.40E-120205434No hitNo description
SMARTSM002341.3E-49210435IPR002913START domain
PfamPF018522.7E-48212435IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-9247434IPR023393START-like domain
SuperFamilySSF559619.45E-22486719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDSGDDPDAS DGQRKKKRYH RHTPRQIQQL EAMFKECPHP DEKQRMQLSR DLGLEPRQIK  60
FWFQNRRTQM KAQHERADNC ALRAENDKIR CENIAMREAL KNVICPTCGG PPVTEDSYFD  120
EQKLRLENAR LKEELDRVSS MASKYLGRPV TQLPPVQPLP ISSLDLSVGG FGNLALGPSL  180
DLDLLTGSSS ALPFPFSTTV SDIEKPIMAD MATNAMEELI RLVQTDEPLW TKPGGDGREI  240
LNLETYDRIF PKLRHQFKSP DILIEASRDS GLVFMSAVAL VDLFMDSRKW AESFPTIVSK  300
SRTLEVLAAG MGGSRSGSLL LMYEEMQVLS PVVPTREFYF LRYCQQMEQG LWAIADVSVE  360
LSRANQFVPP FRSRRLPSGC LIQDMPNGYS KVTWVEHVEI EEKTPTHRLY RDLVNSGVAF  420
GAQRWLATLQ RMCERFACLM AAGTSSRDLG GGNALNKILI CSENLAQNFS VMLNSKSAFN  480
SVIPSPEGKR SMMKLSQRMI NNFCSSLSAS TGNRWTTLSG LNDVGVRVTV HKSTNPGQPN  540
GVVLSAATSI WLPISSERVF SFLKDERTRA QWDVLSSGNS VQEVACVING SHPGNCISLL  600
RALNASQNSM LILQESCTDA WGSLVVYAPI DLPAINIVMS GEDPSYIPLL PSGFTILPDG  660
RPGGGGGATT SSNPMGGSSG SLITVAFQIL VSSLPSAKLN VESVTTVNNL ISTTVQQIKA  720
ALNCSSG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704584.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3Z1010.0A0A2H3Z101_PHODC; homeobox-leucine zipper protein ROC8-like
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11