PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 26555.3 Da PI: 7.1708 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.8e-16 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W + Ed++l+++v+ G+++W++Ia++++ gR++k+c++rw++ XP_010917278.1 4 KGHWRPAEDDKLKELVACCGPHNWNAIAEKLQ-GRSGKSCRLRWYNQ 49 789*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 60.2 | 4.4e-19 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eE+e+l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ + XP_010917278.1 56 RNPFTKEEEERLIACHQIHGNR-WAVIARLFP-GRTDNAVKNHWHVV 100 789*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.971 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-13 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 4 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-11 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 25.153 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 56 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-11 | 58 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 58 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MCTKGHWRPA EDDKLKELVA CCGPHNWNAI AEKLQGRSGK SCRLRWYNQL DPRINRNPFT 60 KEEEERLIAC HQIHGNRWAV IARLFPGRTD NAVKNHWHVV MARRRRERSR FHGKRALRNF 120 NKEGSSKQNN EEEPHELKNM VSFIENYGGR YQNHLALNDH HDHYFDMYED RDNSIEFHDF 180 LQVNSESNNT EDTSTRKEEQ DEGKEQESEA NVRFIDFFAV GCSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-30 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-30 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917278.1 | 1e-169 | transcription factor MYB52 isoform X2 | ||||
Swissprot | Q6R0C4 | 1e-69 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A2H3Y1L3 | 1e-128 | A0A2H3Y1L3_PHODC; transcription factor MYB52-like isoform X2 | ||||
STRING | XP_008791853.1 | 1e-127 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-63 | myb domain protein 52 |
Publications ? help Back to Top | |||
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