PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917278.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 224aa    MW: 26555.3 Da    PI: 7.1708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917278.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-16449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W + Ed++l+++v+  G+++W++Ia++++ gR++k+c++rw++ 
   XP_010917278.1  4 KGHWRPAEDDKLKELVACCGPHNWNAIAEKLQ-GRSGKSCRLRWYNQ 49
                     789*****************************.************96 PP

2Myb_DNA-binding60.24.4e-1956100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eE+e+l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ +
   XP_010917278.1  56 RNPFTKEEEERLIACHQIHGNR-WAVIARLFP-GRTDNAVKNHWHVV 100
                      789*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.971150IPR017930Myb domain
SMARTSM007174.1E-13352IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-29497IPR009057Homeodomain-like
PfamPF002491.1E-15450IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-25557IPR009057Homeodomain-like
CDDcd001672.20E-11748No hitNo description
PROSITE profilePS5129425.15351105IPR017930Myb domain
SMARTSM007171.6E-1655103IPR001005SANT/Myb domain
PfamPF002496.8E-165699IPR001005SANT/Myb domain
CDDcd001672.20E-1158101No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2258103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MCTKGHWRPA EDDKLKELVA CCGPHNWNAI AEKLQGRSGK SCRLRWYNQL DPRINRNPFT  60
KEEEERLIAC HQIHGNRWAV IARLFPGRTD NAVKNHWHVV MARRRRERSR FHGKRALRNF  120
NKEGSSKQNN EEEPHELKNM VSFIENYGGR YQNHLALNDH HDHYFDMYED RDNSIEFHDF  180
LQVNSESNNT EDTSTRKEEQ DEGKEQESEA NVRFIDFFAV GCSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-3011041104C-Myb DNA-Binding Domain
1msf_C3e-3011041104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917278.11e-169transcription factor MYB52 isoform X2
SwissprotQ6R0C41e-69MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A2H3Y1L31e-128A0A2H3Y1L3_PHODC; transcription factor MYB52-like isoform X2
STRINGXP_008791853.11e-127(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-63myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]