PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917267.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 366aa    MW: 39592.2 Da    PI: 5.5893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917267.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17185239256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010917267.1 185 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 239
                     788899***********************************************98 PP
2HD-ZIP_I/II127.45.9e-41185274191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_010917267.1 185 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-AL 274
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.9E-6105142IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466897.7E-18180242IPR009057Homeodomain-like
PROSITE profilePS5007116.763181241IPR001356Homeobox domain
SMARTSM003897.7E-15183245IPR001356Homeobox domain
CDDcd000861.36E-15185242No hitNo description
PfamPF000463.8E-15185239IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-17185239IPR009057Homeodomain-like
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
SMARTSM003401.4E-25241284IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-10241275IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELGLSLGEA PAKAFFAAQK AGVKATGGLV LGFGMGLGVG LGGREEEEEE ERGRVEEEEA  60
REEEEREGEQ ERGSAEPPVQ LNLLPLAPVP RRSTPQLGFP WAPETRNLEV STRGFDVNQA  120
PSAEVEEGAA VSSSPNSTIS SFQMDFSAVM GRGGEKGVTA AGRSEGEVER TSSRASDEEE  180
NGLARKKLRL SKEQSAFLEE SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL  240
KQTEVDCEYL KRCCETLTEE NRRLQKELAE LRALKTSHPF YMHLPATTLS MCPSCERVAS  300
TTTTVPPAAA ANAASAASTA AATTAAVATP AADNRPSSFA SLFSKPRFYS FQAPHSAPTH  360
QPSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233241RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917267.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-108HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A3Q0I2F61e-150A0A3Q0I2F6_PHODC; homeobox-leucine zipper protein HOX11-like
STRINGXP_008791862.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-68homeobox from Arabidopsis thaliana