PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917195.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

M-type_MADS

Protein Properties

Length: 541aa MW: 60816.8 Da PI: 5.4571

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917195.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.3	4.6e-09	53	82	12	41
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifs 41 + Rrngi KK ELS+LCda++a + + XP_010917195.1 53 CYLTRRNGIKKKVRELSILCDADIAHLSIP 82 6889********************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.638	34	94	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-4	34	93	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.84E-14	34	108	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-11	47	88	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MGDNNACLGV PNQVELWRKA SRREERDRER KGEMPRRKVV LEPHPTEQAR MQCYLTRRNG 60 IKKKVRELSI LCDADIAHLS IPPAGEPSLF LGAHTDLLSI LDRFASIDPV MRERRRQQVI 120 DSLKNAYRKR GHEINTDSLL QHNMSGSDEA DECRNRIRQV QEKIDAVNRN LSHWRNPGAI 180 DDILEVVVKE EILRNSLKLV REQKARLEQR NGAPDSTTLE LPYFAFTQHS NPQPVQGALW 240 QELPQRDPAH QNACEGPVGI GAGFNLPLSR QIIQNSLGQE NPTNLEALVS EYRANPNQPT 300 SNEVSNNLLP QWVSSFPGMS NVPILDIISD SSFHSQRQIT QSAMNHEFLA STEACLEERF 360 GVSNSNTSEV PCFGFAPISS LPVEGTLNQV PPDRDLALPP LPEVFVETAD NGAGFNIQQY 420 DQTAQNLLSH VYPTNLETWR PIDVDRPWEG VLNYVPSQQD SHLLVPSQWE NTNMQGLGHI 480 QTCNRDFNFG CSHNQAALDS FGPENLRGAG SFADDPYINC NSGGHFQSGN LLFQHNDLLH 540 F

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MGDNNACLGV PNQVELWRKA SRREERDRER KGEMPRRKVV LEPHPTEQAR MQCYLTRRNG  60
IKKKVRELSI LCDADIAHLS IPPAGEPSLF LGAHTDLLSI LDRFASIDPV MRERRRQQVI  120
DSLKNAYRKR GHEINTDSLL QHNMSGSDEA DECRNRIRQV QEKIDAVNRN LSHWRNPGAI  180
DDILEVVVKE EILRNSLKLV REQKARLEQR NGAPDSTTLE LPYFAFTQHS NPQPVQGALW  240
QELPQRDPAH QNACEGPVGI GAGFNLPLSR QIIQNSLGQE NPTNLEALVS EYRANPNQPT  300
SNEVSNNLLP QWVSSFPGMS NVPILDIISD SSFHSQRQIT QSAMNHEFLA STEACLEERF  360
GVSNSNTSEV PCFGFAPISS LPVEGTLNQV PPDRDLALPP LPEVFVETAD NGAGFNIQQY  420
DQTAQNLLSH VYPTNLETWR PIDVDRPWEG VLNYVPSQQD SHLLVPSQWE NTNMQGLGHI  480
QTCNRDFNFG CSHNQAALDS FGPENLRGAG SFADDPYINC NSGGHFQSGN LLFQHNDLLH  540
F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917195.1	0.0	uncharacterized protein LOC105041845 isoform X2
TrEMBL	A0A2H3XPF5	0.0	A0A2H3XPF5_PHODC; uncharacterized protein LOC103704915
STRING	XP_008786645.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	9e-22	AGAMOUS-like 30