PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRF | ||||||||
Protein Properties | Length: 349aa MW: 39885.3 Da PI: 7.5818 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.5e-24 | 83 | 126 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC +++++++k+CErH+hrg++rsrk++e XP_010917179.1 83 DPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGKNRSRKPVE 126 79***************************************998 PP | |||||||
2 | QLQ | 59.4 | 1e-20 | 12 | 47 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l++Ky+a++ P+P++L++++++ XP_010917179.1 12 PFTPSQWQELEHQALIFKYMASGIPIPSDLILPLRR 47 8********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.6E-10 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.182 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.3E-15 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.921 | 83 | 127 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.7E-20 | 84 | 126 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MMSGRSSSCR HPFTPSQWQE LEHQALIFKY MASGIPIPSD LILPLRRSYL LDSTITSPTL 60 AFPPQPSMNW GWNQVGFGRK ADDPEPGRCR RTDGKKWRCA KEAYPDSKYC ERHMHRGKNR 120 SRKPVEMSLA TTLPSSTTST TSSTSHNPSP YPPLPLSIST PDSYHLLYPY HSSSRPPGVV 180 LNTPHFNLDT PTYTQPDKDY RYCHGMKDVD EYSFFSEASG SERESSWQFR PLGMSLLGES 240 KQGSSALQQN AYSQCERDAE EKQQQHCFVL GADFKLERPG KVDREQEGQR PLRHFFDEWP 300 QKSKDSWVDL EQENSNQASA AYSKTQLSIS IPMSHHDFPV TSCRYRNDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917179.1 | 0.0 | growth-regulating factor 1 | ||||
Swissprot | Q6AWY8 | 1e-104 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A2H3XPD2 | 0.0 | A0A2H3XPD2_PHODC; growth-regulating factor 1-like | ||||
STRING | XP_010273920.1 | 1e-109 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-50 | growth-regulating factor 5 |