PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25480.6 Da PI: 6.2788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l +++ +G g W+ ++++ g++R++k+c++rw++yl XP_010917170.1 13 RGAWSPEEDRILTSYIETHGAGKWSNVPKEAGLNRCGKSCRLRWLNYL 60 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_010917170.1 66 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTI 110 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.168 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-31 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.137 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-17 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.97E-13 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRTPICSQG LNRGAWSPEE DRILTSYIET HGAGKWSNVP KEAGLNRCGK SCRLRWLNYL 60 RPGLKRGNIT QEEEDLIIRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNTI LRKKVQQGTL 120 AQAHELESGT ADQTGAVRTM ATRCSSSSML IDLKVDGEIQ LKDTAAGDQN CSGGESVPSS 180 DNPFSFSKDM VDGWMRGEES QPFFSWEFSS FASFMGTEDL PWSNDVFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917170.1 | 1e-170 | transcription factor TT2 | ||||
Swissprot | Q9FJA2 | 1e-61 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2H3XPA2 | 1e-128 | A0A2H3XPA2_PHODC; transcription factor TT2-like | ||||
STRING | XP_008786727.1 | 1e-129 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 7e-64 | MYB family protein |