PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917157.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 615aa    MW: 67578.4 Da    PI: 6.6169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917157.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-08500548348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010917157.1 500 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 548
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485493552IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-13495556IPR009057Homeodomain-like
SMARTSM007176.9E-9497550IPR001005SANT/Myb domain
CDDcd116604.98E-18499549No hitNo description
SuperFamilySSF466895.54E-16499558IPR009057Homeodomain-like
PfamPF002491.0E-6500548IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MVEGDGRLVP ATDDEVMEVE HLLEEDKSGL ASDEATKYFD GCVSNEGLPS KTSDFEGLSQ  60
AKNAEVDSQE LNARLEEERL RLSSESLNHC TKCMDANHQT LDGCNGTQAC KHKLQPENTS  120
METAPSSMAL NGSQSVQLEG AETHSGPANE AVISSSTVSG TCTSSMPDFS ILKGEICLDN  180
LSIRELQEAF RATFGRQTSV KDKLWLKRRI TMGLTNSCDV PTTSFVIKDH KIVLKEVKEE  240
PSKLQKSKTE AGSLPSDQVT DPTDGNFHNL PTSLTNQTED QQVSGKRLGK PLSEYDEKNE  300
DLQMEQFASK RVRKPTRRYI EELSEFETRE CSARLLSSVK NSGHGQSSPK SQIRPVHDIG  360
SCGTSFSTRL DSLGGFGIQV PYVSRVRRGR PRKNFVSLMK YHPGGIAPNL VKTALGIPAL  420
QQNSEGGSRV KKARAPPMHI TQLLQNFVDE REKRDAETIY GDDEHDLGLE EFDAAGDNVD  480
GNADTEPASK GGVRRKHHRA WTLGEVLKLV EGVARYGAGR WSEIRRLAFA SYSYRTSVDL  540
KDKWRNLLRA SLAQGPSDKG AKNSRKHTSV PIPTPILSRV RELAEMHSQT STELGPSKIS  600
GCGGRNVQEE GSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386392RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917157.10.0uncharacterized protein LOC105041815 isoform X8
TrEMBLA0A2H3ZMT60.0A0A2H3ZMT6_PHODC; uncharacterized protein LOC103704887 isoform X4
STRINGXP_008786580.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-101TRF-like 6