PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917156.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 626aa    MW: 68939.1 Da    PI: 6.7198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917156.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08511559348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010917156.1 511 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 559
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485504563IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13506567IPR009057Homeodomain-like
SMARTSM007176.9E-9508561IPR001005SANT/Myb domain
CDDcd116605.55E-18510560No hitNo description
SuperFamilySSF466895.62E-16510569IPR009057Homeodomain-like
PfamPF002491.0E-6511559IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MVEGDGRLVP ATDDEVMEVE HLLEEDKSGL ASDEATKYFD GCVSNEGLPS KTSDFEGLSQ  60
AKNAEVDSQE LNARLEYIEV MLQKVKQEER LRLSSESLNH CTKCMDANHQ TLDGCNGTQA  120
CKHKLQPENT SMETAPSSMA LNGSQSVQLE GAETHSGPAN EAVISSSTVS GTCTSSMPDF  180
SILKGEICLD NLSIRELQEA FRATFGRQTS VKDKLWLKRR ITMGLTNSCD VPTTSFVIKD  240
HKIVLKEVKE EPSKLQKSKT EAGSLPSDQV TDPTDGNFHN LPTSLTNQTE DQQVSGKRLG  300
KPLSEYDEKN EDLQMEQFAS KRVRKPTRRY IEELSEFETR ECSARLLSSV KNSGHGQSSP  360
KSQIRPVHDI GSCGTSFSTR LDSLGGFGIQ VPYVSRVRRG RPRKNFVSLM KYHPGGIAPN  420
LVKTALGIPA LQQNSEGGSR VKKARAPPMH ITQLLQNFVD EREKRDAETI YGDDEHDLGL  480
EEFDAAGDNV DGNADTEPAS KGGVRRKHHR AWTLGEVLKL VEGVARYGAG RWSEIRRLAF  540
ASYSYRTSVD LKDKWRNLLR ASLAQGPSDK GAKNSRKHTS VPIPTPILSR VRELAEMHSQ  600
TSTELGPSKI SGCGGRNVQE EGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397403RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917156.10.0uncharacterized protein LOC105041815 isoform X7
RefseqXP_029119394.10.0uncharacterized protein LOC105041815 isoform X1
TrEMBLA0A2H3ZMV80.0A0A2H3ZMV8_PHODC; uncharacterized protein LOC103704887 isoform X2
STRINGXP_008786580.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-110TRF-like 6