PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917155.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 645aa    MW: 70987.9 Da    PI: 5.1899
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917155.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08530578348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010917155.1 530 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 578
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485523582IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-13525586IPR009057Homeodomain-like
SMARTSM007176.9E-9527580IPR001005SANT/Myb domain
CDDcd116607.48E-18529579No hitNo description
SuperFamilySSF466895.85E-16529588IPR009057Homeodomain-like
PfamPF002491.1E-6530578IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MGTVVDIQVD GEKETEESDF GKAGVELSTG TAVDGEKDTE ESDFQKSGFG KIVASDPVVY  60
QLVRVEGDGR LVPATDDEVM EVEHLLEEDK SGLASDEATK YFDGCVSNEG LPSKTSDFEG  120
LSQAKNAEVD SQELNARLEY IEVMLQKVKQ EERLRLSSES LNHCTKCMDA NHQTLDGCNG  180
TQACKHKLQP ENTSMETAPS SMALNGSQSV QLEGAETHSG PANEAVISSS TVSGTCTSSM  240
PDFSILKGEI CLDNLSIREL QEAFRATFGR QTSVKDKLWL KRRITMGLTN SCDVPTTSFV  300
IKDHKIVLKE VKEEPSKLQK SKTEAGSLPS DQVTDPTDGN FHNLPTSLTN QTEDQQVSGK  360
RLGKPLSEYD EKNEDLQMEQ FASKRVRKPT RRYIEELSEF ETRECSARLL SSVKNSGHGQ  420
SSPKSQIRPV HDIGSCGTSF STRLDSLGGF GIQVPYVSRV RRGRPRKNFV SLMLQNFVDE  480
REKRDAETIY GDDEHDLGLE EFDAAGDNVD GNADTEPASK GGVRRKHHRA WTLGEVLKLV  540
EGVARYGAGR WSEIRRLAFA SYSYRTSVDL KDKWRNLLRA SLAQGPSDKG AKNSRKHTSV  600
PIPTPILSRV RELAEMHSQT STELGPSKIS GCGGRNVQEE GSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460466RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119398.10.0uncharacterized protein LOC105041815 isoform X6
TrEMBLA0A2H3ZMT20.0A0A2H3ZMT2_PHODC; uncharacterized protein LOC103704887 isoform X7
STRINGXP_008786580.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-110TRF-like 6